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CAZyme Information: MGYG000002370_03612

You are here: Home > Sequence: MGYG000002370_03612

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridioides difficile_A
Lineage Bacteria; Firmicutes_A; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile_A
CAZyme ID MGYG000002370_03612
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
214 24368.94 8.9149
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002370 4277521 Isolate France Europe
Gene Location Start: 9296;  End: 9940  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002370_03612.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK11198 PRK11198 8.65e-15 166 214 98 146
LysM domain/BON superfamily protein; Provisional
COG1652 XkdP 3.56e-14 158 214 205 262
Nucleoid-associated protein YgaU, contains BON and LysM domains [Function unknown].
NF033163 lipo_LipL71 6.24e-10 135 214 382 460
lipoprotein LipL71. Members of this family are lipoprotein LipL71, also known as LruA, as described in Leptospira interrogans but found broadly in the genus Leptospira. Close homologs that are not lipoproteins by sequence are likely defective in their reported coding region.
cd00118 LysM 6.95e-10 164 213 1 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
smart00257 LysM 5.27e-07 165 213 1 44
Lysin motif.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AXU34700.1 4.70e-144 1 214 1 211
AXU30912.1 4.70e-144 1 214 1 211
CDS84765.1 2.72e-143 1 214 1 211
QPL00283.1 4.63e-135 1 214 1 211
AWH82154.1 4.63e-135 1 214 1 211

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5FIM_A 3.06e-08 168 214 101 147
Thestructure of Kbp.K from E. coli [Escherichia coli],7PVC_A Chain A, Potassium binding protein Kbp [Escherichia coli K-12]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P54335 8.70e-35 2 196 7 191
Phage-like element PBSX protein XkdP OS=Bacillus subtilis (strain 168) OX=224308 GN=xkdP PE=4 SV=2
P45932 3.44e-34 2 197 7 192
Uncharacterized protein YqbP OS=Bacillus subtilis (strain 168) OX=224308 GN=yqbP PE=4 SV=1
P0ADE6 1.47e-07 168 214 101 147
Potassium binding protein Kbp OS=Escherichia coli (strain K12) OX=83333 GN=kbp PE=1 SV=2
P0ADE7 1.47e-07 168 214 101 147
Potassium binding protein Kbp OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=kbp PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999923 0.000076 0.000029 0.000000 0.000000 0.000006

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002370_03612.