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CAZyme Information: MGYG000002385_01960

You are here: Home > Sequence: MGYG000002385_01960

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Leminorella richardii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Leminorella; Leminorella richardii
CAZyme ID MGYG000002385_01960
CAZy Family CBM50
CAZyme Description Murein DD-endopeptidase MepM
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
361 MGYG000002385_1|CGC12 39808.18 8.6551
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002385 3976274 Isolate not provided not provided
Gene Location Start: 2100772;  End: 2101857  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002385_01960.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK11649 PRK11649 0.0 1 332 1 332
putative peptidase; Provisional
COG0739 NlpD 1.06e-16 95 333 1 183
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain [Cell wall/membrane/envelope biogenesis].
pfam01551 Peptidase_M23 2.65e-06 312 333 2 23
Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.
pfam04225 OapA 4.97e-06 97 172 4 82
Opacity-associated protein A LysM-like domain. This family includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation. This is a LysM-like domain.
smart00257 LysM 8.73e-06 97 141 1 44
Lysin motif.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
SQI41242.1 2.74e-265 1 361 1 361
VEJ55568.1 4.42e-179 1 333 1 325
AKJ42374.1 4.42e-179 1 333 1 325
QBH96508.1 6.78e-178 1 333 1 333
QKJ04469.1 2.05e-145 1 333 1 332

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2GU1_A 1.19e-45 98 333 10 252
Crystalstructure of a zinc containing peptidase from vibrio cholerae [Vibrio cholerae]
6UE4_A 2.12e-43 97 332 44 285
ShyAEndopeptidase from Vibrio cholerae (Closed form) [Vibrio cholerae O1 biovar El Tor str. N16961],6UE4_B ShyA Endopeptidase from Vibrio cholerae (Closed form) [Vibrio cholerae O1 biovar El Tor str. N16961]
6U2A_A 2.26e-43 97 332 41 282
ShyAendopeptidase from Vibrio cholera (open form) [Vibrio cholerae]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0AFS9 4.89e-125 1 333 1 334
Murein DD-endopeptidase MepM OS=Escherichia coli (strain K12) OX=83333 GN=mepM PE=1 SV=1
P0AFT0 4.89e-125 1 333 1 334
Murein DD-endopeptidase MepM OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=mepM PE=3 SV=1
P0AFT1 4.89e-125 1 333 1 334
Murein DD-endopeptidase MepM OS=Shigella flexneri OX=623 GN=mepM PE=3 SV=1
P44693 8.80e-65 98 347 131 385
Uncharacterized metalloprotease HI_0409 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0409 PE=3 SV=1
Q8K9M4 6.06e-42 97 333 78 311
Uncharacterized metalloprotease BUsg_310 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804 GN=BUsg_310 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000000 0.000027 0.000000 0.000000 0.000000 0.000003

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002385_01960.