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CAZyme Information: MGYG000002400_01125
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Staphylococcus lugdunensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus lugdunensis | |||||||||||
| CAZyme ID | MGYG000002400_01125 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | putative transglycosylase IsaA | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 66079; End: 66780 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd13925 | RPF | 1.39e-07 | 174 | 232 | 1 | 69 | core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF. |
| cd00254 | LT-like | 6.60e-05 | 178 | 208 | 6 | 36 | lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
| pfam01464 | SLT | 2.84e-04 | 166 | 210 | 5 | 46 | Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| SQI89333.1 | 2.22e-143 | 1 | 233 | 1 | 233 |
| QEX27271.1 | 2.22e-143 | 1 | 233 | 1 | 233 |
| AMG64051.1 | 2.22e-143 | 1 | 233 | 1 | 233 |
| ARJ08312.1 | 2.22e-143 | 1 | 233 | 1 | 233 |
| ARJ28786.1 | 2.22e-143 | 1 | 233 | 1 | 233 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q2YWD9 | 2.62e-82 | 1 | 232 | 1 | 232 | Probable transglycosylase IsaA OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=isaA PE=3 SV=1 |
| Q6GDN1 | 3.72e-82 | 1 | 232 | 1 | 232 | Probable transglycosylase IsaA OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=isaA PE=3 SV=1 |
| Q2FDT8 | 6.09e-81 | 1 | 232 | 1 | 232 | Probable transglycosylase IsaA OS=Staphylococcus aureus (strain USA300) OX=367830 GN=isaA PE=3 SV=1 |
| P99160 | 6.09e-81 | 1 | 232 | 1 | 232 | Probable transglycosylase IsaA OS=Staphylococcus aureus (strain N315) OX=158879 GN=isaA PE=1 SV=1 |
| A6QK59 | 6.09e-81 | 1 | 232 | 1 | 232 | Probable transglycosylase IsaA OS=Staphylococcus aureus (strain Newman) OX=426430 GN=isaA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000282 | 0.999028 | 0.000172 | 0.000198 | 0.000165 | 0.000149 |