Species | Yersinia aleksiciae | |||||||||||
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Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia aleksiciae | |||||||||||
CAZyme ID | MGYG000002458_02720 | |||||||||||
CAZy Family | GT4 | |||||||||||
CAZyme Description | Glutamate/aspartate import solute-binding protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 88183; End: 89112 Strand: - |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
PRK10797 | PRK10797 | 0.0 | 1 | 309 | 1 | 302 | glutamate and aspartate transporter subunit; Provisional |
cd13688 | PBP2_GltI_DEBP | 5.19e-114 | 40 | 277 | 1 | 238 | Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold. This subfamily represents the periplasmic-binding protein component of ABC transporter specific for carboxylic amino acids, including GtlI from Escherichia coli. The aspartate-glutamate binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. |
cd01000 | PBP2_Cys_DEBP_like | 1.36e-79 | 40 | 277 | 1 | 228 | Substrate-binding domain of cysteine- and aspartate/glutamate-binding proteins; the type 2 periplasmic-binding protein fold. This family comprises of the periplasmic-binding protein component of ABC transporters specific for cysteine and carboxylic amino acids, as well as their closely related proteins. The cysteine and aspartate-glutamate binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. |
cd13689 | PBP2_BsGlnH | 1.89e-64 | 40 | 278 | 1 | 229 | Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. |
pfam00497 | SBP_bac_3 | 1.27e-54 | 49 | 277 | 1 | 223 | Bacterial extracellular solute-binding proteins, family 3. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QWJ92671.1 | 2.02e-167 | 30 | 309 | 18 | 297 |
QLQ94799.1 | 2.02e-167 | 30 | 309 | 18 | 297 |
QQE94206.1 | 2.02e-167 | 30 | 309 | 18 | 297 |
QXX81055.1 | 4.08e-167 | 39 | 309 | 27 | 297 |
BBV05439.1 | 5.80e-167 | 30 | 309 | 18 | 297 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
2VHA_A | 5.15e-169 | 33 | 309 | 3 | 279 | DEBP[Shigella flexneri],2VHA_B DEBP [Shigella flexneri] |
2IA4_A | 4.47e-163 | 33 | 309 | 3 | 279 | Crystalstructure of Novel amino acid binding protein from Shigella flexneri [Shigella flexneri 2a str. 301],2IA4_B Crystal structure of Novel amino acid binding protein from Shigella flexneri [Shigella flexneri 2a str. 301] |
5EYF_A | 2.90e-28 | 35 | 279 | 3 | 238 | CrystalStructure of Solute-binding Protein from Enterococcus faecium with Bound Glutamate [Enterococcus faecium DO],5EYF_B Crystal Structure of Solute-binding Protein from Enterococcus faecium with Bound Glutamate [Enterococcus faecium DO] |
6SVF_A | 1.13e-20 | 40 | 277 | 3 | 227 | Crystalstructure of the P235GK mutant of ArgBP from T. maritima [Thermotoga maritima MSB8] |
4PRS_A | 2.70e-18 | 40 | 277 | 2 | 225 | Structureof apo ArgBP from T. maritima [Thermotoga maritima MSB8],4PRS_B Structure of apo ArgBP from T. maritima [Thermotoga maritima MSB8],4PSH_A Structure of holo ArgBP from T. maritima [Thermotoga maritima MSB8],4PSH_B Structure of holo ArgBP from T. maritima [Thermotoga maritima MSB8] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q9ZF60 | 5.34e-172 | 1 | 309 | 1 | 302 | Glutamate/aspartate import solute-binding protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=gltI PE=3 SV=3 |
P37902 | 1.19e-168 | 1 | 309 | 1 | 302 | Glutamate/aspartate import solute-binding protein OS=Escherichia coli (strain K12) OX=83333 GN=gltI PE=1 SV=2 |
Q9I402 | 1.40e-110 | 39 | 307 | 29 | 298 | L-glutamate/L-aspartate-binding protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=PA1342 PE=1 SV=1 |
P27676 | 6.33e-22 | 12 | 242 | 24 | 245 | Glutamine-binding protein OS=Geobacillus stearothermophilus OX=1422 GN=glnH PE=3 SV=1 |
O34563 | 7.73e-22 | 31 | 278 | 30 | 268 | ABC transporter glutamine-binding protein GlnH OS=Bacillus subtilis (strain 168) OX=224308 GN=glnH PE=2 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000356 | 0.998807 | 0.000271 | 0.000220 | 0.000181 | 0.000152 |
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