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CAZyme Information: MGYG000002467_02389

You are here: Home > Sequence: MGYG000002467_02389

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia frederiksenii_C
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia frederiksenii_C
CAZyme ID MGYG000002467_02389
CAZy Family PL38
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
442 MGYG000002467_4|CGC2 49703.68 9.8195
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002467 4928795 Isolate Finland Europe
Gene Location Start: 207059;  End: 208387  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002467_02389.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL38 95 374 2.7e-111 0.996415770609319

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam05426 Alginate_lyase 1.56e-99 94 374 1 274
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.
PRK00325 algL 2.29e-04 239 361 136 283
polysaccharide lyase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATM96598.1 4.41e-288 6 442 1 437
QHB33315.1 4.97e-254 36 442 27 433
AOF30951.1 4.55e-253 6 442 4 436
AOF23129.1 4.55e-253 6 442 4 436
AOF34870.1 4.55e-253 6 442 4 436

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3NFV_A 2.86e-66 80 379 33 333
Crystalstructure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.95 A resolution [Bacteroides ovatus ATCC 8483],3NNB_A Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.60 A resolution [Bacteroides ovatus ATCC 8483]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.038614 0.959131 0.001318 0.000324 0.000283 0.000281

TMHMM  Annotations      download full data without filtering help

start end
17 39