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CAZyme Information: MGYG000002471_04182

You are here: Home > Sequence: MGYG000002471_04182

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia mollaretii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia mollaretii
CAZyme ID MGYG000002471_04182
CAZy Family GH24
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
168 MGYG000002471_23|CGC1 18139.96 9.2839
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002471 4663229 Isolate Finland Europe
Gene Location Start: 5419;  End: 5925  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002471_04182.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH24 29 160 2.6e-44 0.9854014598540146

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd16901 lyz_P1 1.31e-65 28 165 2 140
P1 lysozyme Lyz-like proteins. Enterobacteria phage P1 lysozyme Lyz is secreted to the Escherichia coli periplasm where it is membrane bound and inactive. Activation involves the release from the membrane, an intramolecular thiol-disulfide isomerization and extensive structural rearrangement of the N-terminal region. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
cd00737 lyz_endolysin_autolysin 2.71e-47 32 165 1 136
endolysin and autolysin. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
COG3772 RrrD 1.90e-42 28 168 7 151
Phage-related lysozyme (muramidase), GH24 family [Cell wall/membrane/envelope biogenesis].
cd16900 endolysin_R21-like 3.12e-39 30 165 6 142
endolysin R21-like proteins. Unlike T4 E phage lysozyme, the endolysin R21 from Enterobacteria phage P21 has an N-terminal SAR (signal-arrest-release) domain that anchors the endolysin to the membrane in an inactive form, which act to prevent premature lysis of the infected bacterium. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
pfam00959 Phage_lysozyme 1.31e-17 53 157 1 106
Phage lysozyme. This family includes lambda phage lysozyme and E. coli endolysin.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
VEB08523.1 4.93e-115 1 168 1 168
QBQ00481.1 4.93e-115 1 168 1 168
AKF38596.1 2.01e-114 1 168 1 168
ALG44822.1 2.01e-114 1 168 1 168
CBY26850.1 2.01e-114 1 168 1 168

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1XJU_A 1.01e-25 27 168 1 154
ChainA, Lysozyme [Punavirus P1],1XJU_B Chain B, Lysozyme [Punavirus P1]
1XJT_A 8.79e-24 27 168 29 182
ChainA, Lysozyme [Punavirus P1]
6ET6_A 1.36e-19 28 161 52 190
ChainA, Lysozyme [Acinetobacter baumannii]
3HDF_A 1.27e-17 40 167 10 138
ChainA, Lysozyme [Enterobacteria phage P21],3HDF_B Chain B, Lysozyme [Enterobacteria phage P21]
3HDE_A 2.25e-17 40 167 35 163
ChainA, Lysozyme [Enterobacteria phage P21],3HDE_B Chain B, Lysozyme [Enterobacteria phage P21],3HDE_C Chain C, Lysozyme [Enterobacteria phage P21],3HDE_D Chain D, Lysozyme [Enterobacteria phage P21]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q37875 9.60e-25 27 168 29 182
SAR-endolysin OS=Escherichia phage P1 OX=2886926 GN=17 PE=1 SV=1
Q9T1T5 1.39e-21 29 161 4 140
Endolysin OS=Acyrthosiphon pisum secondary endosymbiont phage 1 OX=2682836 GN=13 PE=3 SV=1
Q37896 3.35e-19 29 167 4 145
Endolysin OS=Bacillus phage B103 OX=10778 GN=15 PE=3 SV=1
P07540 1.17e-18 26 167 1 145
Endolysin OS=Bacillus phage PZA OX=10757 GN=15 PE=3 SV=1
P51728 3.30e-18 20 165 27 184
SAR-endolysin OS=Haemophilus phage HP1 (strain HP1c1) OX=1289570 GN=lys PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000361 0.998954 0.000186 0.000190 0.000160 0.000139

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002471_04182.