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CAZyme Information: MGYG000002474_00585
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Rahnella variigena | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Rahnella; Rahnella variigena | |||||||||||
| CAZyme ID | MGYG000002474_00585 | |||||||||||
| CAZy Family | CBM73 | |||||||||||
| CAZyme Description | GlcNAc-binding protein A | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 61940; End: 64495 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| CBM73 | 800 | 849 | 2.5e-20 | 0.9074074074074074 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd06543 | GH18_PF-ChiA-like | 2.34e-105 | 276 | 582 | 1 | 294 | PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature. |
| PRK13211 | PRK13211 | 1.81e-20 | 793 | 850 | 415 | 476 | N-acetylglucosamine-binding protein GbpA. |
| pfam00704 | Glyco_hydro_18 | 2.38e-07 | 299 | 463 | 21 | 179 | Glycosyl hydrolases family 18. |
| pfam18911 | PKD_4 | 9.82e-06 | 594 | 673 | 8 | 80 | PKD domain. This entry is composed of PKD domains found in bacterial surface proteins. |
| cd12215 | ChiC_BD | 1.57e-05 | 149 | 186 | 1 | 38 | Chitin-binding domain of chitinase C. Chitin-binding domain of chitinase C (ChiC) of Streptomyces griseus and related proteins. Chitinase C is a family 19 chitinase, and consists of a N-terminal chitin binding domain and a C-terminal chitin-catalytic domain that effects degradation. Chitinases function in invertebrates in the degradation of old exoskeletons, in fungi to utilize chitin in cell walls, and in bacteria which use chitin as an energy source. ChiC contains the characteristic chitin-binding aromatic residues. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ADW75418.1 | 0.0 | 1 | 851 | 1 | 851 |
| AZP52649.1 | 0.0 | 1 | 851 | 1 | 851 |
| AYA08713.1 | 0.0 | 1 | 851 | 1 | 851 |
| AZP43860.1 | 0.0 | 1 | 851 | 1 | 851 |
| AZP48197.1 | 0.0 | 1 | 851 | 1 | 851 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2DSK_A | 2.68e-39 | 267 | 581 | 1 | 289 | Crystalstructure of catalytic domain of hyperthermophilic chitinase from Pyrococcus furiosus [Pyrococcus furiosus],2DSK_B Crystal structure of catalytic domain of hyperthermophilic chitinase from Pyrococcus furiosus [Pyrococcus furiosus] |
| 3A4W_A | 1.70e-38 | 267 | 581 | 1 | 289 | Crystalstructures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides [Pyrococcus furiosus],3A4W_B Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides [Pyrococcus furiosus] |
| 3A4X_A | 3.13e-38 | 267 | 581 | 1 | 289 | Crystalstructures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides [Pyrococcus furiosus],3A4X_B Crystal structures of catalytic site mutants of active domain 2 of thermostable chitinase from Pyrococcus furiosus complexed with chito-oligosaccharides [Pyrococcus furiosus],3AFB_A Crystal structures of catalytic site mutants of active domain 2 of chitinase from Pyrococcus furiosus [Pyrococcus furiosus],3AFB_B Crystal structures of catalytic site mutants of active domain 2 of chitinase from Pyrococcus furiosus [Pyrococcus furiosus] |
| 6OGD_C | 5.64e-10 | 4 | 92 | 3 | 92 | Cryo-EMstructure of YenTcA in its prepore state [Yersinia entomophaga],6OGD_F Cryo-EM structure of YenTcA in its prepore state [Yersinia entomophaga],6OGD_I Cryo-EM structure of YenTcA in its prepore state [Yersinia entomophaga],6OGD_L Cryo-EM structure of YenTcA in its prepore state [Yersinia entomophaga],6OGD_O Cryo-EM structure of YenTcA in its prepore state [Yersinia entomophaga] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P13656 | 7.48e-254 | 19 | 585 | 331 | 895 | Probable bifunctional chitinase/lysozyme OS=Escherichia coli (strain K12) OX=83333 GN=chiA PE=1 SV=2 |
| O74199 | 5.69e-200 | 39 | 554 | 1 | 511 | Endochitinase 11 OS=Metarhizium anisopliae OX=5530 GN=chi11 PE=1 SV=1 |
| Q87FT0 | 3.73e-16 | 793 | 850 | 425 | 485 | GlcNAc-binding protein A OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=gbpA PE=3 SV=1 |
| Q7MEW9 | 4.90e-16 | 793 | 850 | 424 | 484 | GlcNAc-binding protein A OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=gbpA PE=3 SV=1 |
| Q9KLD5 | 1.52e-15 | 793 | 851 | 424 | 485 | GlcNAc-binding protein A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=gbpA PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000227 | 0.999107 | 0.000159 | 0.000176 | 0.000153 | 0.000144 |