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CAZyme Information: MGYG000002477_02628
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Citrobacter_A amalonaticus | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter_A; Citrobacter_A amalonaticus | |||||||||||
| CAZyme ID | MGYG000002477_02628 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2606939; End: 2607583 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH23 | 18 | 150 | 3.3e-17 | 0.762962962962963 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd16892 | LT_VirB1-like | 1.94e-55 | 10 | 150 | 1 | 138 | VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). |
| PRK13864 | PRK13864 | 2.48e-21 | 2 | 150 | 25 | 169 | type IV secretion system lytic transglycosylase VirB1; Provisional |
| cd13400 | LT_IagB-like | 7.41e-11 | 26 | 150 | 11 | 103 | Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda. |
| cd00254 | LT-like | 2.15e-08 | 26 | 150 | 7 | 106 | lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
| pfam01464 | SLT | 2.97e-06 | 20 | 129 | 12 | 95 | Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AMG53866.1 | 8.76e-152 | 1 | 214 | 1 | 214 |
| QMV95524.1 | 8.76e-152 | 1 | 214 | 1 | 214 |
| ARD51826.1 | 8.76e-152 | 1 | 214 | 1 | 214 |
| QLV60167.1 | 8.76e-152 | 1 | 214 | 1 | 214 |
| BCL49103.1 | 4.61e-138 | 1 | 214 | 1 | 214 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P0C398 | 1.22e-28 | 7 | 150 | 4 | 150 | Type IV secretion system protein virB1 OS=Brucella abortus biovar 1 (strain 9-941) OX=262698 GN=virB1 PE=3 SV=1 |
| Q2YIT5 | 1.22e-28 | 7 | 150 | 4 | 150 | Type IV secretion system protein virB1 OS=Brucella abortus (strain 2308) OX=359391 GN=virB1 PE=3 SV=1 |
| Q8YDZ5 | 1.22e-28 | 7 | 150 | 4 | 150 | Type IV secretion system protein virB1 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) OX=224914 GN=virB1 PE=3 SV=1 |
| Q9RPY4 | 1.22e-28 | 7 | 150 | 4 | 150 | Type IV secretion system protein virB1 OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=virB1 PE=2 SV=1 |
| P17791 | 6.19e-15 | 13 | 163 | 36 | 190 | Protein virB1 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=virB1 PE=3 SV=3 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.577906 | 0.415298 | 0.006029 | 0.000291 | 0.000194 | 0.000288 |