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CAZyme Information: MGYG000002478_01958

You are here: Home > Sequence: MGYG000002478_01958

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola dorei
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola dorei
CAZyme ID MGYG000002478_01958
CAZy Family GH105
CAZyme Description Unsaturated rhamnogalacturonyl hydrolase YteR
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
412 MGYG000002478_1|CGC46 47107.63 6.4079
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002478 5444912 Isolate Finland Europe
Gene Location Start: 2569738;  End: 2570976  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002478_01958.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH105 77 410 1.3e-117 0.9548192771084337

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07470 Glyco_hydro_88 1.18e-112 51 405 1 334
Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases.
COG4225 YesR 1.68e-103 78 405 35 348
Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AII65043.1 0.0 1 412 1 412
QJR71380.1 0.0 1 412 1 412
AII67934.1 0.0 1 412 1 412
QJR67042.1 0.0 1 412 1 412
QJR56716.1 0.0 1 412 1 412

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4WU0_A 1.76e-98 77 405 23 353
StructuralAnalysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824],4WU0_B Structural Analysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824]
1NC5_A 1.20e-84 79 410 41 364
Structureof Protein of Unknown Function of YteR from Bacillus Subtilis [Bacillus subtilis],2D8L_A Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc [Bacillus subtilis]
2GH4_A 4.97e-84 79 410 31 354
ChainA, Putative glycosyl hydrolase yteR [Bacillus subtilis]
3K11_A 2.31e-22 68 350 71 361
Crystalstructure of Putative glycosyl hydrolase (NP_813087.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.80 A resolution [Bacteroides thetaiotaomicron VPI-5482]
4XUV_A 1.21e-17 79 350 49 320
Crystalstructure of a glycoside hydrolase family 105 (GH105) enzyme from Thielavia terrestris [Thermothielavioides terrestris NRRL 8126],4XUV_B Crystal structure of a glycoside hydrolase family 105 (GH105) enzyme from Thielavia terrestris [Thermothielavioides terrestris NRRL 8126]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O34559 6.55e-84 79 410 41 364
Unsaturated rhamnogalacturonyl hydrolase YteR OS=Bacillus subtilis (strain 168) OX=224308 GN=yteR PE=1 SV=1
P0A3U6 2.37e-38 188 405 1 223
Protein Atu3128 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=Atu3128 PE=3 SV=1
P0A3U7 2.37e-38 188 405 1 223
24.9 kDa protein in picA locus OS=Rhizobium radiobacter OX=358 PE=2 SV=1
P9WF04 3.26e-12 182 354 201 369
Unsaturated 3S-rhamnoglycuronyl hydrolase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_28 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001639 0.761565 0.235711 0.000480 0.000310 0.000260

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002478_01958.