logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002482_01281

You are here: Home > Sequence: MGYG000002482_01281

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_E bromii
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Acutalibacteraceae; Ruminococcus_E; Ruminococcus_E bromii
CAZyme ID MGYG000002482_01281
CAZy Family CBM74
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
735 MGYG000002482_63|CGC1 79411.73 4.3513
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002482 2151595 Isolate United States North America
Gene Location Start: 59617;  End: 61824  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002482_01281.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM74 242 568 1e-137 0.9967948717948718

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd14256 Dockerin_I 2.67e-16 675 730 1 56
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.
pfam16738 CBM26 6.41e-11 38 94 1 59
Starch-binding module 26. CBM26 is a carbohydrate-binding module that binds starch.
pfam00404 Dockerin_1 2.55e-10 676 729 1 55
Dockerin type I repeat. The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium.
cd14253 Dockerin 6.01e-06 676 728 1 53
Dockerin repeat domain. Dockerins are modules in the cellulosome complex that often anchor catalytic subunits by binding to cohesin domains of scaffolding proteins. Three types of dockerins and their corresponding cohesin have been described in the literature. This alignment models two consecutive dockerin repeats, the functional unit.
cd14254 Dockerin_II 5.82e-05 676 728 1 51
Type II dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type II dockerins, which are responsible for mediating attachment of the cellulosome complex to the bacterial cell wall.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCT06902.1 0.0 1 710 1 707
CDM67953.1 4.42e-109 46 678 582 1194
AWX97480.1 4.83e-88 33 689 549 1186
AWX95531.1 4.83e-88 33 689 549 1186
QCT07491.1 6.28e-69 1 572 1 528

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000294 0.998960 0.000192 0.000195 0.000175 0.000154

TMHMM  Annotations      download full data without filtering help

start end
7 29