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CAZyme Information: MGYG000002487_01569
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Gordonibacter pamelaeae | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Eggerthellaceae; Gordonibacter; Gordonibacter pamelaeae | |||||||||||
| CAZyme ID | MGYG000002487_01569 | |||||||||||
| CAZy Family | GH73 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 162005; End: 163558 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH73 | 239 | 389 | 6.2e-26 | 0.9921875 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00877 | NLPC_P60 | 1.81e-26 | 419 | 499 | 1 | 86 | NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins. |
| COG0791 | Spr | 1.96e-23 | 405 | 508 | 73 | 185 | Cell wall-associated hydrolase, NlpC family [Cell wall/membrane/envelope biogenesis]. |
| COG1705 | FlgJ | 1.92e-22 | 238 | 396 | 49 | 191 | Flagellum-specific peptidoglycan hydrolase FlgJ [Cell wall/membrane/envelope biogenesis, Cell motility]. |
| NF038016 | sporang_Gsm | 1.99e-19 | 240 | 393 | 168 | 312 | sporangiospore maturation cell wall hydrolase GsmA. The peptidoglycan-hydrolyzing enzyme GsmA occurs in some sporangia-forming members of the Actinobacteria, such as Actinoplanes missouriensis, and is required for proper separation of spores. GsmA proteins have one or two SH3 domains N-terminal to the hydrolase domain. |
| NF033741 | NlpC_p60_RipA | 3.81e-18 | 403 | 503 | 324 | 440 | NlpC/P60 family peptidoglycan endopeptidase RipA. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBL05254.1 | 0.0 | 1 | 517 | 10 | 526 |
| AWG17013.1 | 1.09e-175 | 51 | 513 | 96 | 525 |
| AZR04005.1 | 1.09e-175 | 51 | 513 | 96 | 525 |
| AWG04286.1 | 1.09e-175 | 51 | 513 | 96 | 525 |
| AZR06479.1 | 2.19e-175 | 51 | 513 | 96 | 525 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6B8C_A | 3.19e-18 | 407 | 504 | 28 | 130 | Crystalstructure of NlpC/p60 domain of peptidoglycan hydrolase SagA [Enterococcus faecium] |
| 2XIV_A | 4.19e-15 | 403 | 503 | 76 | 192 | Structureof Rv1477, hypothetical invasion protein of Mycobacterium tuberculosis [Mycobacterium tuberculosis H37Rv] |
| 3PBC_A | 4.61e-15 | 403 | 503 | 81 | 197 | ChainA, Invasion Protein [Mycobacterium tuberculosis] |
| 3NE0_A | 4.61e-15 | 403 | 503 | 81 | 197 | Structureand functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation [Mycobacterium tuberculosis H37Rv] |
| 3S0Q_A | 7.26e-14 | 403 | 503 | 82 | 198 | ChainA, INVASION PROTEIN [Mycobacterium tuberculosis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P13692 | 2.03e-15 | 407 | 504 | 402 | 504 | Protein P54 OS=Enterococcus faecium OX=1352 PE=3 SV=2 |
| P9WHU2 | 3.41e-15 | 400 | 502 | 263 | 370 | Probable endopeptidase MT2245 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT2245 PE=3 SV=1 |
| P9WHU3 | 3.41e-15 | 400 | 502 | 263 | 370 | Probable endopeptidase Rv2190c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv2190c PE=3 SV=1 |
| P67474 | 3.41e-15 | 400 | 502 | 263 | 370 | Probable endopeptidase Mb2213c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2213C PE=3 SV=1 |
| O53168 | 2.95e-13 | 403 | 503 | 339 | 455 | Peptidoglycan endopeptidase RipA OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ripA PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000054 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
