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CAZyme Information: MGYG000002520_03038
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pluralibacter gergoviae | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Pluralibacter; Pluralibacter gergoviae | |||||||||||
| CAZyme ID | MGYG000002520_03038 | |||||||||||
| CAZy Family | GH0 | |||||||||||
| CAZyme Description | HTH-type transcriptional activator RhaR | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 3288055; End: 3290397 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3664 | XynB | 8.16e-30 | 418 | 770 | 83 | 428 | Beta-xylosidase [Carbohydrate transport and metabolism]. |
| smart00342 | HTH_ARAC | 5.02e-25 | 180 | 263 | 1 | 84 | helix_turn_helix, arabinose operon control protein. |
| COG2207 | AraC | 3.11e-23 | 163 | 265 | 19 | 121 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]. |
| pfam12833 | HTH_18 | 5.56e-20 | 186 | 265 | 1 | 81 | Helix-turn-helix domain. |
| COG4977 | GlxA | 5.76e-17 | 127 | 265 | 182 | 321 | Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QKN82148.1 | 0.0 | 1 | 769 | 1 | 770 |
| QGU12072.1 | 0.0 | 1 | 769 | 1 | 769 |
| QHI56550.1 | 0.0 | 1 | 769 | 1 | 770 |
| QGW18391.1 | 0.0 | 6 | 769 | 6 | 769 |
| QMV77404.1 | 0.0 | 1 | 769 | 1 | 770 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6SWI_A | 7.15e-12 | 181 | 264 | 23 | 106 | TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus] |
| 3LSG_A | 5.46e-06 | 173 | 263 | 11 | 102 | Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q6GKK1 | 1.10e-39 | 24 | 743 | 21 | 716 | Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1 |
| Q8NYT6 | 2.63e-39 | 24 | 743 | 21 | 716 | Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1 |
| Q6GD21 | 2.63e-39 | 24 | 743 | 21 | 716 | Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1 |
| Q5HJR8 | 3.52e-39 | 24 | 743 | 21 | 716 | Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2 |
| Q7A882 | 3.52e-39 | 24 | 743 | 21 | 716 | Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000049 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |