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CAZyme Information: MGYG000002529_00041
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Aeromonas veronii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Aeromonadaceae; Aeromonas; Aeromonas veronii | |||||||||||
| CAZyme ID | MGYG000002529_00041 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | putative L,D-transpeptidase YcfS | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 46125; End: 47081 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK10260 | PRK10260 | 5.75e-107 | 29 | 308 | 22 | 302 | L,D-transpeptidase; Provisional |
| PRK10190 | PRK10190 | 6.88e-99 | 29 | 318 | 19 | 309 | L,D-transpeptidase; Provisional |
| cd16913 | YkuD_like | 1.65e-40 | 106 | 242 | 2 | 121 | L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue. |
| COG1376 | ErfK | 6.65e-40 | 26 | 245 | 18 | 232 | Lipoprotein-anchoring transpeptidase ErfK/SrfK [Cell wall/membrane/envelope biogenesis]. |
| pfam17969 | Ldt_C | 2.17e-21 | 245 | 308 | 1 | 64 | L,D-transpeptidase C-terminal domain. This is the C-terminal domain found in d-transpeptidases (Ldt) homologues from E.coli. Three of these enzymes (YbiS, ErfK, YcfS) have been shown to cross-link Braun's lipoprotein to the peptidoglycan (PG), while the other two (YnhG, YcbB) form direct meso-diaminopimelate (DAP-DAP, or 3-3) cross-links within the PG. Family members include erfK (ldtA), ybiS (ldtB), ycfS (ldtC), and ynhG (ldtE). |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QLE84536.1 | 5.02e-106 | 15 | 312 | 6 | 299 |
| QXC55304.1 | 4.97e-88 | 30 | 312 | 19 | 297 |
| QUY00823.1 | 4.57e-86 | 30 | 312 | 19 | 297 |
| QPC55488.1 | 4.57e-86 | 30 | 312 | 19 | 297 |
| QTV10206.1 | 4.57e-86 | 30 | 312 | 19 | 297 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4LZH_A | 4.85e-87 | 29 | 308 | 1 | 281 | ChainA, L,D-transpeptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] |
| 6V45_A | 1.55e-07 | 103 | 242 | 70 | 209 | Crystalstructure of a Probable carnitine operon oxidoreductase caia from Brucella melitensis [Brucella melitensis bv. 1 str. 16M] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P75954 | 2.46e-95 | 26 | 317 | 23 | 316 | Probable L,D-transpeptidase YcfS OS=Escherichia coli (strain K12) OX=83333 GN=ycfS PE=1 SV=1 |
| P40680 | 8.38e-91 | 31 | 313 | 21 | 304 | Probable L,D-transpeptidase ErfK/SrfK OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=erfK PE=3 SV=1 |
| P39176 | 1.60e-88 | 31 | 313 | 21 | 304 | Probable L,D-transpeptidase ErfK/SrfK OS=Escherichia coli (strain K12) OX=83333 GN=erfK PE=1 SV=2 |
| P76193 | 3.42e-88 | 29 | 313 | 21 | 304 | Probable L,D-transpeptidase YnhG OS=Escherichia coli (strain K12) OX=83333 GN=ynhG PE=1 SV=1 |
| P0AAX8 | 2.28e-87 | 29 | 308 | 22 | 302 | Probable L,D-transpeptidase YbiS OS=Escherichia coli (strain K12) OX=83333 GN=ybiS PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000468 | 0.998163 | 0.000822 | 0.000201 | 0.000160 | 0.000149 |