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CAZyme Information: MGYG000002532_01807
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Enterovibrio hollisae | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Vibrionaceae; Enterovibrio; Enterovibrio hollisae | |||||||||||
| CAZyme ID | MGYG000002532_01807 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | putative L,D-transpeptidase YcfS | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1994578; End: 1995540 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK10260 | PRK10260 | 1.04e-95 | 7 | 303 | 4 | 305 | L,D-transpeptidase; Provisional |
| PRK10190 | PRK10190 | 4.81e-84 | 6 | 303 | 4 | 302 | L,D-transpeptidase; Provisional |
| COG1376 | ErfK | 3.83e-50 | 50 | 237 | 47 | 232 | Lipoprotein-anchoring transpeptidase ErfK/SrfK [Cell wall/membrane/envelope biogenesis]. |
| cd16913 | YkuD_like | 6.73e-38 | 98 | 234 | 2 | 121 | L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue. |
| pfam17969 | Ldt_C | 6.82e-16 | 237 | 303 | 1 | 67 | L,D-transpeptidase C-terminal domain. This is the C-terminal domain found in d-transpeptidases (Ldt) homologues from E.coli. Three of these enzymes (YbiS, ErfK, YcfS) have been shown to cross-link Braun's lipoprotein to the peptidoglycan (PG), while the other two (YnhG, YcbB) form direct meso-diaminopimelate (DAP-DAP, or 3-3) cross-links within the PG. Family members include erfK (ldtA), ybiS (ldtB), ycfS (ldtC), and ynhG (ldtE). |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QXC55304.1 | 6.82e-114 | 29 | 303 | 26 | 296 |
| QLE84536.1 | 4.04e-113 | 6 | 303 | 3 | 298 |
| QUY00823.1 | 1.11e-112 | 29 | 303 | 26 | 296 |
| QPC55488.1 | 1.11e-112 | 29 | 303 | 26 | 296 |
| QTV10206.1 | 1.11e-112 | 29 | 303 | 26 | 296 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4LZH_A | 1.91e-76 | 21 | 303 | 1 | 284 | ChainA, L,D-transpeptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P75954 | 2.25e-91 | 3 | 303 | 6 | 310 | Probable L,D-transpeptidase YcfS OS=Escherichia coli (strain K12) OX=83333 GN=ycfS PE=1 SV=1 |
| P76193 | 3.95e-82 | 23 | 262 | 23 | 261 | Probable L,D-transpeptidase YnhG OS=Escherichia coli (strain K12) OX=83333 GN=ynhG PE=1 SV=1 |
| P39176 | 6.24e-78 | 21 | 303 | 19 | 302 | Probable L,D-transpeptidase ErfK/SrfK OS=Escherichia coli (strain K12) OX=83333 GN=erfK PE=1 SV=2 |
| P0AAX8 | 3.12e-77 | 26 | 303 | 27 | 305 | Probable L,D-transpeptidase YbiS OS=Escherichia coli (strain K12) OX=83333 GN=ybiS PE=1 SV=1 |
| P0AAX9 | 3.12e-77 | 26 | 303 | 27 | 305 | Probable L,D-transpeptidase YbiS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ybiS PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000274 | 0.999016 | 0.000200 | 0.000167 | 0.000163 | 0.000154 |