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CAZyme Information: MGYG000002536_00662
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Plesiomonas shigelloides | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Plesiomonas; Plesiomonas shigelloides | |||||||||||
| CAZyme ID | MGYG000002536_00662 | |||||||||||
| CAZy Family | GT104 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 7842; End: 8987 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT104 | 8 | 379 | 1.8e-128 | 0.9656992084432717 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| TIGR03837 | EarP | 0.0 | 8 | 379 | 1 | 371 | Elongation-Factor P (EF-P) rhamnosyltransferase EarP. This model describes a conserved protein that typically is encoded next to the gene efp for translation elongation factor P. |
| pfam10093 | DUF2331 | 0.0 | 8 | 379 | 1 | 373 | Uncharacterized protein conserved in bacteria (DUF2331). Members of this family of hypothetical bacterial proteins have no known function. |
| COG4394 | EarP | 4.04e-130 | 8 | 379 | 4 | 366 | Elongation-Factor P (EF-P) rhamnosyltransferase EarP [Translation, ribosomal structure and biogenesis]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| SBT61264.1 | 4.95e-294 | 1 | 381 | 1 | 381 |
| QOH78574.1 | 9.98e-294 | 1 | 381 | 1 | 381 |
| QWK96073.1 | 2.01e-293 | 1 | 381 | 1 | 381 |
| QWK93483.1 | 2.35e-292 | 1 | 381 | 1 | 381 |
| AVQ86094.1 | 2.35e-292 | 1 | 381 | 1 | 381 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5NV8_A | 3.44e-116 | 8 | 381 | 18 | 389 | Structuralbasis for EarP-mediated arginine glycosylation of translation elongation factor EF-P [Pseudomonas putida KT2440] |
| 6J7M_A | 3.73e-114 | 8 | 377 | 23 | 390 | Complexstructure of the Pseudomonas aeruginosa rhamnosyltransferase EarP with the acceptor elongation factor EF-P [Pseudomonas aeruginosa PAO1],6J7M_C Complex structure of the Pseudomonas aeruginosa rhamnosyltransferase EarP with the acceptor elongation factor EF-P [Pseudomonas aeruginosa PAO1] |
| 6J7L_A | 4.82e-114 | 8 | 377 | 23 | 390 | Crystalstructure of Pseudomonas aeruginosa Earp in complex with TDP [Pseudomonas aeruginosa PAO1] |
| 6J7J_A | 2.74e-113 | 8 | 377 | 23 | 390 | Crystalstructure of Pseudomonas aeruginosa Earp [Pseudomonas aeruginosa PAO1],6J7K_A Crystal structure of Pseudomonas aeruginosa Earp in complex with TDP-Rha [Pseudomonas aeruginosa PAO1] |
| 5WXI_A | 1.31e-59 | 10 | 364 | 10 | 361 | EarPbound with dTDP-rhamnose (soaked) [Neisseria meningitidis H44/76],5WXI_B EarP bound with dTDP-rhamnose (soaked) [Neisseria meningitidis H44/76],5WXJ_A Apo EarP [Neisseria meningitidis H44/76],5WXJ_B Apo EarP [Neisseria meningitidis H44/76],5WXK_A EarP bound with domain I of EF-P [Neisseria meningitidis H44/76] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q88LS1 | 1.23e-115 | 8 | 381 | 5 | 376 | Protein-arginine rhamnosyltransferase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=earP PE=1 SV=1 |
| Q9HZZ1 | 1.10e-113 | 8 | 377 | 4 | 371 | Protein-arginine rhamnosyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=earP PE=1 SV=1 |
| Q8EEP8 | 8.20e-113 | 8 | 381 | 10 | 395 | Protein-arginine rhamnosyltransferase OS=Shewanella oneidensis (strain MR-1) OX=211586 GN=earP PE=1 SV=1 |
| A0A0T7AQA7 | 2.57e-59 | 10 | 364 | 10 | 361 | Protein-arginine rhamnosyltransferase OS=Neisseria meningitidis OX=487 GN=earP PE=1 SV=1 |
| E6MVV9 | 7.15e-59 | 10 | 364 | 10 | 361 | Protein-arginine rhamnosyltransferase OS=Neisseria meningitidis serogroup B / serotype 15 (strain H44/76) OX=909420 GN=earP PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000068 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |