You are browsing environment: HUMAN GUT
CAZyme Information: MGYG000002548_00468
You are here: Home > Sequence: MGYG000002548_00468
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Staphylococcus argenteus | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus argenteus | |||||||||||
| CAZyme ID | MGYG000002548_00468 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | putative transglycosylase IsaA | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | Start: 75349; End: 76050 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd13925 | RPF | 4.46e-07 | 174 | 232 | 1 | 69 | core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF. |
| pfam01464 | SLT | 5.16e-05 | 166 | 204 | 5 | 43 | Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
| cd00254 | LT-like | 1.71e-04 | 177 | 207 | 5 | 35 | lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
| pfam06737 | Transglycosylas | 0.002 | 173 | 231 | 2 | 72 | Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues. |
| cd00442 | Lyz-like | 0.003 | 175 | 209 | 1 | 37 | lysozyme-like domains. This family contains several members, including soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, chitosanases, and pesticin. Typical members are involved in the hydrolysis of beta-1,4- linked polysaccharides. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| BBN31134.1 | 5.33e-151 | 1 | 233 | 1 | 233 |
| CCE60212.1 | 5.33e-151 | 1 | 233 | 1 | 233 |
| QDZ03559.1 | 1.53e-150 | 1 | 233 | 1 | 233 |
| API80461.1 | 1.53e-150 | 1 | 233 | 1 | 233 |
| BBD87251.1 | 2.09e-150 | 1 | 233 | 39 | 271 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q2YWD9 | 1.19e-148 | 1 | 233 | 1 | 233 | Probable transglycosylase IsaA OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=isaA PE=3 SV=1 |
| P65645 | 3.42e-148 | 1 | 233 | 1 | 233 | Probable transglycosylase IsaA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=isaA PE=1 SV=1 |
| A7X6T9 | 3.42e-148 | 1 | 233 | 1 | 233 | Probable transglycosylase IsaA OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) OX=418127 GN=isaA PE=3 SV=1 |
| P99160 | 3.42e-148 | 1 | 233 | 1 | 233 | Probable transglycosylase IsaA OS=Staphylococcus aureus (strain N315) OX=158879 GN=isaA PE=1 SV=1 |
| Q2FV52 | 1.98e-147 | 1 | 233 | 1 | 233 | Probable transglycosylase IsaA OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=isaA PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000283 | 0.998910 | 0.000179 | 0.000225 | 0.000195 | 0.000172 |