Species | Ruminococcus_C sp900545285 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C sp900545285 | |||||||||||
CAZyme ID | MGYG000002573_00350 | |||||||||||
CAZy Family | CBM4 | |||||||||||
CAZyme Description | Cellulose 1,4-beta-cellobiosidase | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 58463; End: 61555 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GH9 | 361 | 903 | 6.7e-108 | 0.9880382775119617 |
CBM4 | 41 | 215 | 2.2e-19 | 0.9761904761904762 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
pfam00759 | Glyco_hydro_9 | 6.01e-73 | 362 | 903 | 2 | 374 | Glycosyl hydrolase family 9. |
pfam02927 | CelD_N | 5.02e-21 | 262 | 344 | 3 | 83 | Cellulase N-terminal ig-like domain. |
cd02850 | E_set_Cellulase_N | 7.97e-20 | 264 | 349 | 4 | 86 | N-terminal Early set domain associated with the catalytic domain of cellulase. E or "early" set domains are associated with the catalytic domain of cellulases at the N-terminal end. Cellulases are O-glycosyl hydrolases (GHs) that hydrolyze beta 1-4 glucosidic bonds in cellulose. They are usually categorized into either exoglucanases, which sequentially release terminal sugar units from the cellulose chain, or endoglucanases, which also attack the chain internally. The N-terminal domain of cellulase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. |
cd14256 | Dockerin_I | 2.45e-10 | 962 | 1018 | 1 | 56 | Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex. |
cd14253 | Dockerin | 6.66e-07 | 963 | 1019 | 1 | 56 | Dockerin repeat domain. Dockerins are modules in the cellulosome complex that often anchor catalytic subunits by binding to cohesin domains of scaffolding proteins. Three types of dockerins and their corresponding cohesin have been described in the literature. This alignment models two consecutive dockerin repeats, the functional unit. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
CBL17684.1 | 3.49e-252 | 1 | 988 | 1 | 919 |
BAH56283.1 | 5.57e-217 | 39 | 907 | 174 | 1007 |
AAR01216.1 | 2.93e-205 | 25 | 910 | 13 | 902 |
CAS03458.1 | 1.30e-204 | 25 | 910 | 17 | 906 |
ADU21576.1 | 2.39e-202 | 37 | 905 | 30 | 798 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
1UT9_A | 2.15e-136 | 262 | 907 | 7 | 605 | ChainA, CELLULOSE 1,4-BETA-CELLOBIOSIDASE [Acetivibrio thermocellus] |
1RQ5_A | 6.12e-136 | 262 | 909 | 7 | 607 | ChainA, Cellobiohydrolase [Acetivibrio thermocellus] |
6DHT_A | 7.46e-53 | 262 | 907 | 18 | 565 | Bacteroidesovatus GH9 Bacova_02649 [Bacteroides ovatus ATCC 8483] |
5U0H_A | 7.21e-49 | 271 | 908 | 3 | 542 | Crystalstructure of GH family 9 endoglucanase J30 [Thermobacillus composti KWC4] |
5U2O_A | 5.76e-48 | 271 | 908 | 3 | 542 | Crystalstructure of Zn-binding triple mutant of GH family 9 endoglucanase J30 [Thermobacillus composti KWC4] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
A3DCH1 | 1.83e-155 | 43 | 983 | 45 | 853 | Cellulose 1,4-beta-cellobiosidase OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=celK PE=3 SV=1 |
P0C2S1 | 9.97e-155 | 43 | 983 | 45 | 853 | Cellulose 1,4-beta-cellobiosidase OS=Acetivibrio thermocellus OX=1515 GN=celK PE=1 SV=1 |
Q05156 | 1.21e-107 | 26 | 909 | 17 | 745 | Cellulase 1 OS=Streptomyces reticuli OX=1926 GN=cel1 PE=1 SV=1 |
P14090 | 3.95e-106 | 257 | 929 | 333 | 930 | Endoglucanase C OS=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) OX=590998 GN=cenC PE=1 SV=2 |
P10476 | 1.12e-96 | 264 | 910 | 39 | 602 | Endoglucanase A OS=Cellvibrio japonicus (strain Ueda107) OX=498211 GN=celA PE=3 SV=2 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.006783 | 0.988986 | 0.000388 | 0.003190 | 0.000332 | 0.000276 |
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