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CAZyme Information: MGYG000002657_01422

You are here: Home > Sequence: MGYG000002657_01422

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; CAG-95;
CAZyme ID MGYG000002657_01422
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
517 57935.94 4.4458
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002657 2838774 MAG United Republic of Tanzania Africa
Gene Location Start: 19231;  End: 20784  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002657_01422.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 225 497 5.1e-42 0.7661538461538462

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.68e-10 222 415 187 394
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.82e-08 264 501 88 314
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 1.58e-06 228 477 140 381
Probable polygalacturonase
pfam06835 LptC 3.41e-06 141 240 17 123
Lipopolysaccharide-assembly, LptC-related. This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The lipopolysaccharide component of the outer bacterial membrane is transported form its source of origin to the outer membrane by a set of proteins constituting a transport machinery that is made up of LptA, LptB, LptC, LptD, LptE. LptC is located on the inner membrane side of the intermembrane space.
PLN02218 PLN02218 7.35e-05 243 470 164 388
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ABX43664.1 1.26e-233 17 517 18 518
BCK00431.1 1.19e-217 1 517 1 520
ACI19833.1 2.56e-142 41 507 30 475
ACK41503.1 1.28e-139 43 507 32 475
QTE67472.1 3.27e-127 12 508 9 479

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 1.23e-06 205 417 136 359
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.964346 0.032760 0.001586 0.000167 0.000107 0.001068

TMHMM  Annotations      download full data without filtering help

start end
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