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CAZyme Information: MGYG000002683_01257
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; RUG12999; RUG12999; ; | |||||||||||
| CAZyme ID | MGYG000002683_01257 | |||||||||||
| CAZy Family | PL35 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 3326; End: 7036 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL35 | 764 | 935 | 2e-42 | 0.9720670391061452 |
| CBM32 | 1124 | 1231 | 7.2e-19 | 0.8467741935483871 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00754 | F5_F8_type_C | 1.49e-12 | 1113 | 1231 | 1 | 127 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
| pfam07833 | Cu_amine_oxidN1 | 1.16e-09 | 265 | 339 | 1 | 74 | Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other. |
| pfam07833 | Cu_amine_oxidN1 | 6.35e-09 | 228 | 295 | 28 | 93 | Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other. |
| pfam07940 | Hepar_II_III | 5.65e-08 | 749 | 924 | 9 | 181 | Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin. |
| pfam16332 | DUF4962 | 7.71e-04 | 399 | 545 | 132 | 290 | Domain of unknown function (DUF4962). This family consists of uncharacterized proteins around 870 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AZS17848.1 | 4.65e-136 | 38 | 1235 | 44 | 1278 |
| QUH30172.1 | 1.35e-130 | 356 | 1235 | 23 | 894 |
| ALS27107.1 | 3.41e-127 | 388 | 1234 | 682 | 1511 |
| QNK58643.1 | 1.65e-118 | 396 | 1234 | 785 | 1609 |
| AYB44936.1 | 4.91e-116 | 403 | 1231 | 476 | 1292 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7D29_A | 2.15e-17 | 1112 | 1234 | 12 | 132 | CBM32of AlyQ [Persicobacter sp. CCB-QB2],7D2A_A CBM32 of AlyQ in complex with 4,5-unsaturated mannuronic acid [Persicobacter sp. CCB-QB2] |
| 5XNR_A | 1.48e-15 | 1112 | 1234 | 12 | 132 | TruncatedAlyQ with CBM32 and alginate lyase domains [Persicobacter sp. CCB-QB2] |
| 3A0O_A | 4.75e-08 | 514 | 907 | 259 | 661 | Crystalstructure of alginate lyase from Agrobacterium tumefaciens C58 [Agrobacterium fabrum str. C58],3A0O_B Crystal structure of alginate lyase from Agrobacterium tumefaciens C58 [Agrobacterium fabrum str. C58] |
| 2JD9_A | 5.54e-07 | 1112 | 1231 | 11 | 131 | Structureof a pectin binding carbohydrate binding module determined in an orthorhombic crystal form. [Yersinia enterocolitica],2JDA_A Structure of a pectin binding carbohydrate binding module determined in an monoclinic crystal form. [Yersinia enterocolitica],2JDA_B Structure of a pectin binding carbohydrate binding module determined in an monoclinic crystal form. [Yersinia enterocolitica] |
| 3AFL_A | 7.22e-07 | 514 | 907 | 259 | 661 | Crystalstructure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide [Agrobacterium fabrum str. C58] |
Swiss-Prot Hits help
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000680 | 0.998570 | 0.000245 | 0.000169 | 0.000155 | 0.000156 |
