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CAZyme Information: MGYG000002888_01960
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Corynebacterium kroppenstedtii_A | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Actinomycetia; Mycobacteriales; Mycobacteriaceae; Corynebacterium; Corynebacterium kroppenstedtii_A | |||||||||||
| CAZyme ID | MGYG000002888_01960 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 4385; End: 6997 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd13402 | LT_TF-like | 4.91e-44 | 598 | 716 | 1 | 110 | lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
| COG3953 | SLT | 3.46e-21 | 592 | 716 | 9 | 133 | SLT domain protein [Mobilome: prophages, transposons]. |
| COG5412 | COG5412 | 2.68e-09 | 4 | 379 | 88 | 492 | Phage-related protein [Mobilome: prophages, transposons]. |
| pfam01464 | SLT | 1.03e-07 | 605 | 664 | 19 | 73 | Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
| cd00254 | LT-like | 1.38e-07 | 605 | 681 | 8 | 69 | lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QRP14781.1 | 0.0 | 1 | 870 | 387 | 1256 |
| QRP10329.1 | 0.0 | 1 | 870 | 387 | 1256 |
| CAB93921.2 | 8.17e-69 | 343 | 787 | 839 | 1438 |
| QLJ05716.1 | 3.86e-60 | 352 | 720 | 932 | 1290 |
| QLJ01544.1 | 7.15e-59 | 352 | 720 | 947 | 1305 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P54334 | 2.28e-17 | 572 | 720 | 1089 | 1232 | Phage-like element PBSX protein XkdO OS=Bacillus subtilis (strain 168) OX=224308 GN=xkdO PE=4 SV=2 |
| P45931 | 1.45e-15 | 572 | 720 | 1341 | 1484 | Uncharacterized protein YqbO OS=Bacillus subtilis (strain 168) OX=224308 GN=yqbO PE=1 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.999896 | 0.000117 | 0.000002 | 0.000000 | 0.000000 | 0.000000 |
TMHMM Annotations download full data without filtering help
| start | end |
|---|---|
| 96 | 118 |
| 164 | 186 |
| 199 | 221 |
| 236 | 258 |
| 263 | 285 |