Species | Pantoea sp002920175 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Pantoea; Pantoea sp002920175 | |||||||||||
CAZyme ID | MGYG000002889_02912 | |||||||||||
CAZy Family | AA3 | |||||||||||
CAZyme Description | Oxygen-dependent choline dehydrogenase | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 64233; End: 65912 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
AA3 | 2 | 532 | 3.9e-168 | 0.9929577464788732 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
COG2303 | BetA | 0.0 | 1 | 537 | 6 | 539 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
PRK02106 | PRK02106 | 0.0 | 1 | 559 | 4 | 559 | choline dehydrogenase; Validated |
TIGR01810 | betA | 0.0 | 4 | 537 | 1 | 532 | choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli, Staphylococcus xylosus, and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. [Cellular processes, Adaptations to atypical conditions] |
pfam00732 | GMC_oxred_N | 1.35e-67 | 73 | 301 | 15 | 218 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
pfam05199 | GMC_oxred_C | 1.90e-45 | 393 | 527 | 3 | 143 | GMC oxidoreductase. This domain found associated with pfam00732. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
CAB3230510.1 | 1.48e-186 | 2 | 546 | 24 | 570 |
ANI26486.1 | 1.89e-180 | 2 | 537 | 70 | 607 |
AWP09430.1 | 3.21e-179 | 2 | 537 | 19 | 556 |
CAG5086058.1 | 2.50e-160 | 1 | 547 | 13 | 579 |
CEF60566.1 | 2.51e-155 | 5 | 544 | 35 | 581 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
3LJP_A | 5.21e-90 | 2 | 542 | 13 | 537 | ChainA, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis] |
2JBV_A | 2.03e-89 | 2 | 542 | 13 | 537 | Crystalstructure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis] |
3NNE_A | 2.03e-89 | 2 | 542 | 13 | 537 | Crystalstructure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis] |
6YRU_AAA | 7.84e-81 | 2 | 543 | 7 | 572 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
6ZH7_A | 7.84e-81 | 2 | 543 | 7 | 572 | ChainA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
B7MCD0 | 0.0 | 1 | 555 | 1 | 555 | Oxygen-dependent choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=betA PE=3 SV=1 |
B7V5R3 | 0.0 | 2 | 559 | 4 | 561 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=betA PE=3 SV=1 |
B7UJG4 | 0.0 | 1 | 555 | 1 | 555 | Oxygen-dependent choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=betA PE=3 SV=1 |
B7N8L3 | 0.0 | 1 | 555 | 1 | 555 | Oxygen-dependent choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=betA PE=3 SV=1 |
P17444 | 0.0 | 1 | 555 | 1 | 555 | Oxygen-dependent choline dehydrogenase OS=Escherichia coli (strain K12) OX=83333 GN=betA PE=1 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000031 | 0.000002 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
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