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CAZyme Information: MGYG000003028_00818
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Collinsella sp900551655 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp900551655 | |||||||||||
| CAZyme ID | MGYG000003028_00818 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 70; End: 1140 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 8 | 306 | 2.7e-28 | 0.8461538461538461 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 2.65e-15 | 4 | 199 | 134 | 368 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam00295 | Glyco_hydro_28 | 4.60e-08 | 94 | 174 | 88 | 176 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| pfam13229 | Beta_helix | 7.26e-06 | 93 | 197 | 2 | 110 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
| PLN03010 | PLN03010 | 8.93e-06 | 73 | 162 | 134 | 233 | polygalacturonase |
| PLN02155 | PLN02155 | 4.35e-05 | 66 | 171 | 120 | 231 | polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AEB07770.1 | 1.19e-174 | 1 | 353 | 53 | 405 |
| QUC03291.1 | 1.48e-172 | 1 | 355 | 50 | 402 |
| QED59087.1 | 3.33e-88 | 1 | 329 | 57 | 379 |
| AUJ85227.1 | 7.31e-83 | 1 | 303 | 56 | 357 |
| ASG79845.1 | 5.61e-79 | 1 | 330 | 55 | 378 |
Swiss-Prot Hits help
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000050 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |