Species | Fusobacterium_A sp900543175 | |||||||||||
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Lineage | Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium_A; Fusobacterium_A sp900543175 | |||||||||||
CAZyme ID | MGYG000003056_01997 | |||||||||||
CAZy Family | GH13 | |||||||||||
CAZyme Description | 1,4-alpha-glucan branching enzyme GlgB | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 2716; End: 3417 Strand: - |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
PRK05402 | PRK05402 | 2.19e-85 | 4 | 206 | 518 | 721 | 1,4-alpha-glucan branching protein GlgB. |
PRK12313 | PRK12313 | 1.78e-83 | 4 | 206 | 422 | 625 | 1,4-alpha-glucan branching protein GlgB. |
COG0296 | GlgB | 3.56e-60 | 4 | 206 | 417 | 626 | 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]. |
cd11322 | AmyAc_Glg_BE | 4.45e-49 | 4 | 96 | 311 | 402 | Alpha amylase catalytic domain found in the Glycogen branching enzyme (also called 1,4-alpha-glucan branching enzyme). The glycogen branching enzyme catalyzes the third step of glycogen biosynthesis by the cleavage of an alpha-(1,4)-glucosidic linkage and the formation a new alpha-(1,6)-branch by subsequent transfer of cleaved oligosaccharide. They are part of a group called branching enzymes which catalyze the formation of alpha-1,6 branch points in either glycogen or starch. This group includes proteins from bacteria, eukaryotes, and archaea. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. |
PRK14705 | PRK14705 | 1.47e-46 | 4 | 199 | 1018 | 1213 | glycogen branching enzyme; Provisional |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
BBA50431.1 | 1.24e-107 | 2 | 227 | 411 | 632 |
AVQ26996.1 | 1.94e-107 | 2 | 213 | 411 | 622 |
SQJ09734.1 | 1.94e-107 | 2 | 213 | 411 | 622 |
AVQ31365.1 | 2.61e-107 | 2 | 229 | 411 | 634 |
VEH39888.1 | 1.82e-104 | 2 | 205 | 411 | 614 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
6JOY_A | 5.66e-52 | 4 | 209 | 417 | 619 | TheX-ray Crystallographic Structure of Branching Enzyme from Rhodothermus obamensis STB05 [Rhodothermus marinus] |
6KLF_A | 4.18e-45 | 2 | 207 | 542 | 748 | ChainA, 1,4-alpha-glucan branching enzyme GlgB [Crocosphaera subtropica ATCC 51142] |
5GR0_A | 4.96e-45 | 2 | 207 | 566 | 772 | Crystalstructure of branching enzyme D501A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142] |
5GR2_A | 4.96e-45 | 2 | 207 | 566 | 772 | Crystalstructure of branching enzyme L541A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142],5GR4_A Crystal structure of branching enzyme L541A mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142] |
5GR1_A | 4.96e-45 | 2 | 207 | 566 | 772 | Crystalstructure of branching enzyme Y500A/D501A mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142],5GR6_A Crystal structure of branching enzyme Y500A/D501A double mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q8RF62 | 1.39e-80 | 2 | 210 | 402 | 611 | 1,4-alpha-glucan branching enzyme GlgB OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=glgB PE=3 SV=1 |
B8CVY1 | 8.15e-58 | 2 | 208 | 420 | 627 | 1,4-alpha-glucan branching enzyme GlgB OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) OX=373903 GN=glgB PE=3 SV=1 |
A9VMV8 | 7.84e-55 | 2 | 220 | 411 | 630 | 1,4-alpha-glucan branching enzyme GlgB OS=Bacillus mycoides (strain KBAB4) OX=315730 GN=glgB PE=3 SV=1 |
Q6HC15 | 1.09e-54 | 2 | 220 | 411 | 630 | 1,4-alpha-glucan branching enzyme GlgB OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309 GN=glgB PE=3 SV=1 |
B7JDF1 | 1.09e-54 | 2 | 220 | 411 | 630 | 1,4-alpha-glucan branching enzyme GlgB OS=Bacillus cereus (strain AH820) OX=405535 GN=glgB PE=3 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000056 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
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