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CAZyme Information: MGYG000003065_01137

You are here: Home > Sequence: MGYG000003065_01137

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_B sp900544395
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Ruminococcus_B; Ruminococcus_B sp900544395
CAZyme ID MGYG000003065_01137
CAZy Family CBM32
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1398 MGYG000003065_11|CGC2 152483.73 4.4339
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003065 2628797 MAG United States North America
Gene Location Start: 41762;  End: 45958  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003065_01137.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM32 58 190 6.4e-19 0.9516129032258065

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13306 LRR_5 6.95e-23 791 912 1 124
Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.
sd00036 LRR_3 1.69e-22 791 912 3 129
leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.
sd00036 LRR_3 2.08e-19 515 619 33 142
leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.
pfam13306 LRR_5 1.12e-18 530 625 1 98
Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.
sd00036 LRR_3 4.02e-18 530 625 3 102
leucine-rich repeats. A leucine-rich repeat (LRR) is a structural protein motif of 20-30 amino acids that is unusually rich in the hydrophobic amino acid leucine. The conserved eleven-residue sequence motif (LxxLxLxxN/CxL) within the LRRs corresponds to the beta-strand and adjacent loop regions, whereas the remaining parts of the repeats are variable. LRRs fold together to form a solenoid protein domain, termed leucine-rich repeat domain. Leucine-rich repeats are usually involved in protein-protein interactions.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QHB23133.1 0.0 1 1395 32 1718
QEI30621.1 0.0 1 1395 32 1718
QHB24341.1 9.20e-166 46 1395 53 1751
QEI31850.1 9.20e-166 46 1395 53 1751
QRT30606.1 9.20e-166 46 1395 53 1751

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2Y5P_A 1.03e-09 984 1052 6 73
B-repeatof Listeria monocytogenes InlB (internalin B) [Listeria monocytogenes EGD],2Y5P_B B-repeat of Listeria monocytogenes InlB (internalin B) [Listeria monocytogenes EGD],2Y5P_C B-repeat of Listeria monocytogenes InlB (internalin B) [Listeria monocytogenes EGD],2Y5P_D B-repeat of Listeria monocytogenes InlB (internalin B) [Listeria monocytogenes EGD]
2Y5Q_A 3.82e-09 949 1052 257 361
Listeriamonocytogenes InlB (internalin B) residues 36-392 [Listeria monocytogenes],7PV9_A Chain A, Internalin B [Listeria monocytogenes EGD-e],7PV9_B Chain B, Internalin B [Listeria monocytogenes EGD-e],7PV9_C Chain C, Internalin B [Listeria monocytogenes EGD-e]
1M9S_A 7.10e-09 949 1052 254 358
Crystalstructure of Internalin B (InlB), a Listeria monocytogenes virulence protein containing SH3-like domains. [Listeria monocytogenes]
7NMS_A 2.09e-08 949 1052 257 361
ChainA, Internalin B [Listeria monocytogenes EGD-e],7PV8_A Chain A, Internalin B [Listeria monocytogenes EGD-e]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0DQD2 4.00e-08 949 1052 287 391
Internalin B OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=inlB PE=1 SV=1
P0DQD3 4.00e-08 949 1052 287 391
Internalin B OS=Listeria monocytogenes serotype 1/2a (strain EGD / Mackaness) OX=1334565 GN=inlB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000275 0.999032 0.000161 0.000200 0.000150 0.000136

TMHMM  Annotations      download full data without filtering help

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