Species | Chimaeribacter coloradensis | |||||||||||
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Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Chimaeribacter; Chimaeribacter coloradensis | |||||||||||
CAZyme ID | MGYG000003123_02361 | |||||||||||
CAZy Family | GT4 | |||||||||||
CAZyme Description | Glutamate/aspartate import solute-binding protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 7834; End: 8754 Strand: + |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
PRK10797 | PRK10797 | 0.0 | 1 | 305 | 1 | 299 | glutamate and aspartate transporter subunit; Provisional |
cd13688 | PBP2_GltI_DEBP | 2.41e-119 | 39 | 276 | 1 | 238 | Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold. This subfamily represents the periplasmic-binding protein component of ABC transporter specific for carboxylic amino acids, including GtlI from Escherichia coli. The aspartate-glutamate binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. |
cd01000 | PBP2_Cys_DEBP_like | 7.24e-87 | 39 | 276 | 1 | 228 | Substrate-binding domain of cysteine- and aspartate/glutamate-binding proteins; the type 2 periplasmic-binding protein fold. This family comprises of the periplasmic-binding protein component of ABC transporters specific for cysteine and carboxylic amino acids, as well as their closely related proteins. The cysteine and aspartate-glutamate binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. |
cd13689 | PBP2_BsGlnH | 1.16e-64 | 39 | 276 | 1 | 228 | Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold. This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. |
smart00062 | PBPb | 1.05e-57 | 47 | 276 | 1 | 219 | Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QXF32872.1 | 1.48e-159 | 1 | 305 | 1 | 294 |
AWK41187.1 | 3.48e-158 | 1 | 305 | 1 | 294 |
AXG41920.1 | 3.48e-158 | 1 | 305 | 1 | 294 |
AXG46507.1 | 3.48e-158 | 1 | 305 | 1 | 294 |
QWJ92671.1 | 8.15e-157 | 1 | 305 | 1 | 294 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
2VHA_A | 2.52e-166 | 38 | 305 | 9 | 276 | DEBP[Shigella flexneri],2VHA_B DEBP [Shigella flexneri] |
2IA4_A | 5.12e-159 | 38 | 305 | 9 | 276 | Crystalstructure of Novel amino acid binding protein from Shigella flexneri [Shigella flexneri 2a str. 301],2IA4_B Crystal structure of Novel amino acid binding protein from Shigella flexneri [Shigella flexneri 2a str. 301] |
5EYF_A | 2.62e-29 | 32 | 276 | 1 | 236 | CrystalStructure of Solute-binding Protein from Enterococcus faecium with Bound Glutamate [Enterococcus faecium DO],5EYF_B Crystal Structure of Solute-binding Protein from Enterococcus faecium with Bound Glutamate [Enterococcus faecium DO] |
4ZV1_A | 1.16e-25 | 46 | 276 | 10 | 231 | Anancestral arginine-binding protein bound to arginine [synthetic construct],4ZV2_A An ancestral arginine-binding protein bound to glutamine [synthetic construct] |
4YMX_A | 2.05e-23 | 37 | 278 | 28 | 260 | ChainA, ABC-type amino acid transport system, periplasmic component [Caldanaerobacter subterraneus subsp. tengcongensis MB4],4YMX_B Chain B, ABC-type amino acid transport system, periplasmic component [Caldanaerobacter subterraneus subsp. tengcongensis MB4] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q9ZF60 | 4.07e-173 | 1 | 305 | 1 | 299 | Glutamate/aspartate import solute-binding protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=gltI PE=3 SV=3 |
P37902 | 5.02e-167 | 1 | 305 | 1 | 299 | Glutamate/aspartate import solute-binding protein OS=Escherichia coli (strain K12) OX=83333 GN=gltI PE=1 SV=2 |
Q9I402 | 1.24e-115 | 38 | 305 | 29 | 297 | L-glutamate/L-aspartate-binding protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=PA1342 PE=1 SV=1 |
O34563 | 3.71e-28 | 30 | 278 | 30 | 269 | ABC transporter glutamine-binding protein GlnH OS=Bacillus subtilis (strain 168) OX=224308 GN=glnH PE=2 SV=1 |
P27676 | 8.45e-24 | 37 | 241 | 50 | 245 | Glutamine-binding protein OS=Geobacillus stearothermophilus OX=1422 GN=glnH PE=3 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000441 | 0.998636 | 0.000229 | 0.000262 | 0.000202 | 0.000169 |
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