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CAZyme Information: MGYG000003144_00253
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Aeromonas rivipollensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Aeromonadaceae; Aeromonas; Aeromonas rivipollensis | |||||||||||
| CAZyme ID | MGYG000003144_00253 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | putative L,D-transpeptidase YcfS | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 280917; End: 281834 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK10260 | PRK10260 | 2.01e-101 | 3 | 300 | 2 | 302 | L,D-transpeptidase; Provisional |
| PRK10190 | PRK10190 | 4.11e-98 | 5 | 304 | 3 | 303 | L,D-transpeptidase; Provisional |
| COG1376 | ErfK | 1.70e-41 | 5 | 237 | 5 | 232 | Lipoprotein-anchoring transpeptidase ErfK/SrfK [Cell wall/membrane/envelope biogenesis]. |
| cd16913 | YkuD_like | 2.07e-39 | 98 | 234 | 2 | 121 | L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue. |
| pfam17969 | Ldt_C | 4.46e-22 | 237 | 300 | 1 | 64 | L,D-transpeptidase C-terminal domain. This is the C-terminal domain found in d-transpeptidases (Ldt) homologues from E.coli. Three of these enzymes (YbiS, ErfK, YcfS) have been shown to cross-link Braun's lipoprotein to the peptidoglycan (PG), while the other two (YnhG, YcbB) form direct meso-diaminopimelate (DAP-DAP, or 3-3) cross-links within the PG. Family members include erfK (ldtA), ybiS (ldtB), ycfS (ldtC), and ynhG (ldtE). |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QLE84536.1 | 5.05e-110 | 9 | 304 | 5 | 299 |
| QXC55304.1 | 1.57e-88 | 23 | 304 | 20 | 297 |
| QUY00823.1 | 8.24e-86 | 12 | 304 | 11 | 297 |
| QPC55488.1 | 8.24e-86 | 12 | 304 | 11 | 297 |
| QTV10206.1 | 8.24e-86 | 12 | 304 | 11 | 297 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4LZH_A | 1.94e-80 | 25 | 300 | 5 | 281 | ChainA, L,D-transpeptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] |
| 6V45_A | 2.71e-11 | 95 | 234 | 70 | 209 | Crystalstructure of a Probable carnitine operon oxidoreductase caia from Brucella melitensis [Brucella melitensis bv. 1 str. 16M] |
| 2MTZ_A | 2.91e-11 | 38 | 233 | 3 | 165 | Haddockmodel of Bacillus subtilis L,D-transpeptidase in complex with a peptidoglycan hexamuropeptide [Bacillus subtilis],3ZQD_A B. subtilis L,D-transpeptidase [Bacillus subtilis subsp. subtilis str. 168],4A52_A NMR structure of the imipenem-acylated L,D-transpeptidase from Bacillus subtilis [Bacillus subtilis subsp. subtilis str. 168] |
| 4A1I_A | 6.20e-11 | 42 | 233 | 5 | 163 | ykudfrom B.subtilis [Bacillus subtilis],4A1I_B ykud from B.subtilis [Bacillus subtilis],4A1I_C ykud from B.subtilis [Bacillus subtilis],4A1I_D ykud from B.subtilis [Bacillus subtilis],4A1I_E ykud from B.subtilis [Bacillus subtilis],4A1I_F ykud from B.subtilis [Bacillus subtilis],4A1I_G ykud from B.subtilis [Bacillus subtilis],4A1I_H ykud from B.subtilis [Bacillus subtilis],4A1J_A Ykud L,D-transpeptidase from B.subtilis [Bacillus subtilis],4A1J_B Ykud L,D-transpeptidase from B.subtilis [Bacillus subtilis] |
| 1Y7M_A | 2.92e-10 | 42 | 233 | 4 | 162 | ChainA, Crystal Structure of the B. subtilis YkuD protein at 2 A resolution [Bacillus subtilis subsp. subtilis str. 168],1Y7M_B Chain B, Crystal Structure of the B. subtilis YkuD protein at 2 A resolution [Bacillus subtilis subsp. subtilis str. 168] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P75954 | 1.91e-96 | 12 | 300 | 17 | 307 | Probable L,D-transpeptidase YcfS OS=Escherichia coli (strain K12) OX=83333 GN=ycfS PE=1 SV=1 |
| P39176 | 8.86e-90 | 5 | 304 | 2 | 303 | Probable L,D-transpeptidase ErfK/SrfK OS=Escherichia coli (strain K12) OX=83333 GN=erfK PE=1 SV=2 |
| P76193 | 6.15e-88 | 1 | 304 | 1 | 303 | Probable L,D-transpeptidase YnhG OS=Escherichia coli (strain K12) OX=83333 GN=ynhG PE=1 SV=1 |
| P40680 | 5.15e-86 | 25 | 304 | 23 | 303 | Probable L,D-transpeptidase ErfK/SrfK OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=erfK PE=3 SV=1 |
| P0AAX8 | 2.79e-82 | 3 | 300 | 2 | 302 | Probable L,D-transpeptidase YbiS OS=Escherichia coli (strain K12) OX=83333 GN=ybiS PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000305 | 0.998972 | 0.000203 | 0.000178 | 0.000164 | 0.000149 |