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CAZyme Information: MGYG000003186_00268
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Gleimia europaea_A | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Actinomycetaceae; Gleimia; Gleimia europaea_A | |||||||||||
| CAZyme ID | MGYG000003186_00268 | |||||||||||
| CAZy Family | CBM48 | |||||||||||
| CAZyme Description | 1,4-alpha-glucan branching enzyme GlgB | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 307681; End: 309864 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH13 | 273 | 573 | 3.4e-164 | 0.9966777408637874 |
| CBM48 | 122 | 213 | 3e-19 | 0.9210526315789473 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK14705 | PRK14705 | 0.0 | 5 | 724 | 500 | 1222 | glycogen branching enzyme; Provisional |
| COG0296 | GlgB | 0.0 | 98 | 724 | 1 | 628 | 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]. |
| PRK14706 | PRK14706 | 0.0 | 123 | 727 | 27 | 624 | glycogen branching enzyme; Provisional |
| TIGR01515 | branching_enzym | 0.0 | 107 | 723 | 1 | 618 | alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. This model describes the glycogen branching enzymes which are responsible for the transfer of chains of approx. 7 alpha(1--4)-linked glucosyl residues to other similar chains (in new alpha(1--6) linkages) in the biosynthesis of glycogen. This enzyme is a member of the broader amylase family of starch hydrolases which fold as (beta/alpha)8 barrels, the so-called TIM-barrel structure. All of the sequences comprising the seed of this model have been experimentally characterized. This model encompasses both bacterial and eukaryotic species. No archaea have this enzyme, although Aquifex aolicus does. Two species, Bacillus thuringiensis and Clostridium perfringens have two sequences each which are annotated as amylases. These annotations are aparrently in error. GP|18143720 from C. perfringens, for instance, contains the note "674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap." A branching enzyme from Porphyromonas gingivales, OMNI|PG1793, appears to be more closely related to the eukaryotic species (across a deep phylogenetic split) and may represent an instance of lateral transfer from this species' host. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here. [Energy metabolism, Biosynthesis and degradation of polysaccharides] |
| PRK12313 | PRK12313 | 0.0 | 105 | 726 | 9 | 629 | 1,4-alpha-glucan branching protein GlgB. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QWW20370.1 | 0.0 | 2 | 727 | 3 | 728 |
| QPK80607.1 | 0.0 | 4 | 724 | 6 | 726 |
| QCT35294.1 | 0.0 | 4 | 724 | 6 | 726 |
| QGS11215.1 | 0.0 | 4 | 724 | 6 | 726 |
| AKU65049.1 | 0.0 | 4 | 724 | 6 | 726 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3K1D_A | 0.0 | 9 | 724 | 6 | 721 | Crystalstructure of glycogen branching enzyme synonym: 1,4-alpha-D-glucan:1,4-alpha-D-GLUCAN 6-glucosyl-transferase from mycobacterium tuberculosis H37RV [Mycobacterium tuberculosis H37Rv] |
| 5GR5_A | 2.17e-244 | 21 | 723 | 38 | 772 | Crystalstructure of branching enzyme W610A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142] |
| 5GR1_A | 6.18e-244 | 21 | 723 | 38 | 772 | Crystalstructure of branching enzyme Y500A/D501A mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose [Crocosphaera subtropica ATCC 51142],5GR6_A Crystal structure of branching enzyme Y500A/D501A double mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142] |
| 5GQZ_A | 8.75e-244 | 21 | 723 | 38 | 772 | Crystalstructure of branching enzyme Y500A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142] |
| 5GR0_A | 1.75e-243 | 21 | 723 | 38 | 772 | Crystalstructure of branching enzyme D501A mutant from Cyanothece sp. ATCC 51142 [Crocosphaera subtropica ATCC 51142] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q1B568 | 0.0 | 11 | 725 | 24 | 742 | 1,4-alpha-glucan branching enzyme GlgB OS=Mycobacterium sp. (strain MCS) OX=164756 GN=glgB PE=3 SV=1 |
| Q47SE7 | 0.0 | 11 | 722 | 32 | 744 | 1,4-alpha-glucan branching enzyme GlgB OS=Thermobifida fusca (strain YX) OX=269800 GN=glgB PE=3 SV=1 |
| Q2J6Q9 | 0.0 | 13 | 724 | 96 | 811 | 1,4-alpha-glucan branching enzyme GlgB OS=Frankia casuarinae (strain DSM 45818 / CECT 9043 / CcI3) OX=106370 GN=glgB PE=3 SV=1 |
| Q5Z0W8 | 0.0 | 8 | 722 | 27 | 739 | 1,4-alpha-glucan branching enzyme GlgB OS=Nocardia farcinica (strain IFM 10152) OX=247156 GN=glgB PE=3 SV=1 |
| Q0SGR9 | 0.0 | 9 | 722 | 12 | 728 | 1,4-alpha-glucan branching enzyme GlgB OS=Rhodococcus jostii (strain RHA1) OX=101510 GN=glgB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000066 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |