dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000003196_00953

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Basic Information help

Species

Corynebacterium sp900539985

Lineage

Bacteria; Actinobacteriota; Actinomycetia; Mycobacteriales; Mycobacteriaceae; Corynebacterium; Corynebacterium sp900539985

CAZyme ID

MGYG000003196_00953

CAZy Family

GH3

CAZyme Description

Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
406		42602.38	4.0839

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003196	2252984	MAG	United States	North America

Gene Location

Start: 3540; End: 4760 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000003196_00953.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH3	141	357	6.6e-45	0.9351851851851852

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	8.36e-64	81	392	3	308	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	1.69e-55	94	392	19	313	Glycosyl hydrolase family 3 N terminal domain.
PRK05337	PRK05337	5.90e-46	107	357	26	278	beta-hexosaminidase; Provisional

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QRQ67786.1	1.03e-255	21	406	1	386
QQN48100.1	1.11e-243	21	406	1	386
QQU82600.1	7.48e-242	21	406	1	386
QQA98808.1	6.51e-236	21	406	1	386
VEH73762.1	1.23e-199	1	392	1	393

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5IOB_A	8.09e-103	67	384	15	335	Crystalstructure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum [Corynebacterium glutamicum ATCC 13032],5IOB_B Crystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum [Corynebacterium glutamicum ATCC 13032],5IOB_C Crystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum [Corynebacterium glutamicum ATCC 13032],5IOB_D Crystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum [Corynebacterium glutamicum ATCC 13032],5IOB_E Crystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum [Corynebacterium glutamicum ATCC 13032],5IOB_F Crystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum [Corynebacterium glutamicum ATCC 13032],5IOB_G Crystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum [Corynebacterium glutamicum ATCC 13032],5IOB_H Crystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum [Corynebacterium glutamicum ATCC 13032]
6GFV_A	3.31e-64	82	386	19	327	Mtuberculosis LpqI [Mycobacterium tuberculosis H37Rv],6GFV_B M tuberculosis LpqI [Mycobacterium tuberculosis H37Rv]
4YYF_A	6.64e-63	82	380	42	343	ChainA, Beta-N-acetylhexosaminidase [Mycolicibacterium smegmatis MC2 155],4YYF_B Chain B, Beta-N-acetylhexosaminidase [Mycolicibacterium smegmatis MC2 155],4YYF_C Chain C, Beta-N-acetylhexosaminidase [Mycolicibacterium smegmatis MC2 155]
6K5J_A	4.08e-35	97	386	32	327	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
4GVF_A	7.62e-30	107	357	26	277	Crystalstructure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) bound to GlcNAc [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2],4GVF_B Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) bound to GlcNAc [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2],4GVG_A Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2],4GVG_B Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2],4GVH_A Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) covalently bound to 5-fluoro-GlcNAc. [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2],4GVH_B Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) covalently bound to 5-fluoro-GlcNAc. [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2],4HZM_A Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) bound to N-[(3S,4R,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)piperidin-3-yl]butanamide [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2],4HZM_B Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) bound to N-[(3S,4R,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)piperidin-3-yl]butanamide [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
L7N6B0	6.18e-63	82	386	62	370	Beta-hexosaminidase LpqI OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=lpqI PE=1 SV=1
A0A0H3M1P5	1.72e-62	82	386	62	370	Beta-hexosaminidase LpqI OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) OX=410289 GN=lpqI PE=3 SV=1
B0U3L0	2.59e-33	130	373	46	292	Beta-hexosaminidase OS=Xylella fastidiosa (strain M12) OX=405440 GN=nagZ PE=3 SV=1
Q9PAZ0	3.60e-33	130	373	46	292	Beta-hexosaminidase OS=Xylella fastidiosa (strain 9a5c) OX=160492 GN=nagZ PE=3 SV=1
B4SRK3	3.60e-33	130	373	46	292	Beta-hexosaminidase OS=Stenotrophomonas maltophilia (strain R551-3) OX=391008 GN=nagZ PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.006131	0.244419	0.748997	0.000283	0.000149	0.000029

TMHMM Annotations help

There is no transmembrane helices in MGYG000003196_00953.