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CAZyme Information: MGYG000003249_00395

You are here: Home > Sequence: MGYG000003249_00395

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Victivallis sp900761715
Lineage Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp900761715
CAZyme ID MGYG000003249_00395
CAZy Family GH39
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1180 129888.69 5.2542
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003249 2933905 MAG United States North America
Gene Location Start: 841;  End: 4383  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003249_00395.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH39 528 815 1.6e-27 0.7238979118329466

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd09621 CBM9_like_5 6.45e-69 993 1179 1 188
DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
cd09619 CBM9_like_4 4.20e-11 1017 1164 29 175
DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
COG3693 XynA 2.38e-08 488 658 20 206
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
cd00241 DOMON_like 4.99e-06 1008 1160 2 157
Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
pfam01229 Glyco_hydro_39 2.40e-05 572 686 114 237
Glycosyl hydrolases family 39.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVM47149.1 9.04e-280 57 1180 52 1307
AVM46276.1 2.29e-234 50 1180 30 1137
AHF94342.1 1.42e-190 234 1180 85 1033
AHF90198.1 4.04e-179 213 1179 40 1005
AVM44759.1 6.99e-179 350 1180 147 965

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000372 0.998852 0.000188 0.000212 0.000184 0.000173

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003249_00395.