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CAZyme Information: MGYG000003337_00652
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Ruminococcus_C sp900765125 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C sp900765125 | |||||||||||
| CAZyme ID | MGYG000003337_00652 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 3724; End: 5850 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 14 | 199 | 2.8e-57 | 0.9076923076923077 |
| CBM13 | 314 | 460 | 1e-21 | 0.7074468085106383 |
| CBM13 | 470 | 634 | 3.4e-19 | 0.8191489361702128 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3866 | PelB | 1.77e-31 | 2 | 273 | 82 | 341 | Pectate lyase [Carbohydrate transport and metabolism]. |
| pfam00544 | Pec_lyase_C | 8.53e-23 | 13 | 200 | 30 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| smart00656 | Amb_all | 2.92e-21 | 10 | 204 | 9 | 190 | Amb_all domain. |
| pfam14200 | RicinB_lectin_2 | 3.55e-16 | 316 | 394 | 15 | 89 | Ricin-type beta-trefoil lectin domain-like. |
| pfam14200 | RicinB_lectin_2 | 5.66e-16 | 354 | 443 | 5 | 89 | Ricin-type beta-trefoil lectin domain-like. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBL16867.1 | 4.18e-299 | 5 | 680 | 252 | 887 |
| CDM68184.1 | 3.82e-66 | 9 | 373 | 233 | 584 |
| ANF98568.1 | 1.07e-53 | 5 | 275 | 76 | 332 |
| AHK51122.1 | 8.37e-53 | 13 | 277 | 104 | 350 |
| AZJ42522.1 | 8.37e-53 | 13 | 277 | 104 | 350 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5B2H_A | 1.72e-07 | 384 | 510 | 163 | 280 | Crystalstructure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum],5B2H_B Crystal structure of HA33 from Clostridium botulinum serotype C strain Yoichi [Clostridium botulinum] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P94449 | 8.01e-49 | 13 | 274 | 97 | 337 | Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1 |
| O34819 | 9.93e-47 | 13 | 274 | 97 | 337 | Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1 |
| P27027 | 4.01e-46 | 9 | 274 | 59 | 304 | Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2 |
| P24112 | 1.11e-45 | 12 | 276 | 62 | 308 | Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1 |
| Q51915 | 2.32e-09 | 11 | 260 | 107 | 364 | Pectate lyase OS=Pseudomonas marginalis OX=298 GN=pel PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.999709 | 0.000281 | 0.000032 | 0.000001 | 0.000000 | 0.000006 |