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CAZyme Information: MGYG000003378_04401
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Chimaeribacter arupi | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Chimaeribacter; Chimaeribacter arupi | |||||||||||
| CAZyme ID | MGYG000003378_04401 | |||||||||||
| CAZy Family | GH23 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1922; End: 2422 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH23 | 35 | 141 | 1.7e-17 | 0.7111111111111111 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd13400 | LT_IagB-like | 2.19e-41 | 32 | 152 | 1 | 108 | Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda. |
| PRK15328 | PRK15328 | 7.52e-30 | 1 | 156 | 2 | 144 | type III secretion system invasion protein IagB. |
| PRK13722 | PRK13722 | 7.40e-25 | 23 | 162 | 21 | 156 | lytic transglycosylase; Provisional |
| pfam01464 | SLT | 1.14e-23 | 25 | 144 | 1 | 110 | Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
| cd00254 | LT-like | 2.73e-12 | 36 | 132 | 1 | 84 | lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QAV47616.1 | 5.55e-111 | 1 | 166 | 1 | 166 |
| QAV52180.1 | 5.55e-111 | 1 | 166 | 1 | 166 |
| QDY44254.1 | 3.75e-109 | 1 | 166 | 1 | 166 |
| QHM74036.1 | 6.48e-89 | 16 | 164 | 56 | 204 |
| QGY32547.1 | 1.38e-72 | 1 | 161 | 1 | 161 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4XP8_A | 3.71e-13 | 23 | 112 | 2 | 85 | Structureof EtgA D60N mutant [Escherichia coli] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q00739 | 5.42e-26 | 23 | 158 | 21 | 149 | X polypeptide OS=Escherichia coli OX=562 GN=X PE=3 SV=1 |
| Q07568 | 6.91e-26 | 21 | 156 | 17 | 143 | Protein IpgF OS=Shigella flexneri OX=623 GN=ipgF PE=3 SV=1 |
| P17738 | 7.65e-26 | 23 | 158 | 21 | 149 | X polypeptide OS=Escherichia coli OX=562 GN=X PE=3 SV=1 |
| P14499 | 1.08e-25 | 22 | 162 | 20 | 156 | X polypeptide OS=Escherichia coli OX=562 GN=X PE=3 SV=1 |
| P47737 | 1.08e-25 | 23 | 162 | 21 | 156 | X polypeptide OS=Escherichia coli (strain K12) OX=83333 GN=yubQ PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000238 | 0.999104 | 0.000173 | 0.000172 | 0.000150 | 0.000140 |