Species | Stenotrophomonas sp003028475 | |||||||||||
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Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas sp003028475 | |||||||||||
CAZyme ID | MGYG000003400_03403 | |||||||||||
CAZy Family | GH23 | |||||||||||
CAZyme Description | Membrane-bound lytic murein transglycosylase F | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 27158; End: 28051 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GH23 | 184 | 290 | 3.3e-29 | 0.7925925925925926 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
cd00254 | LT-like | 2.06e-45 | 183 | 283 | 1 | 106 | lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
cd13401 | Slt70-like | 3.97e-43 | 166 | 283 | 4 | 142 | 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda. |
cd16896 | LT_Slt70-like | 1.74e-40 | 168 | 283 | 4 | 140 | uncharacterized lytic transglycosylase subfamily with similarity to Slt70. Uncharacterized lytic transglycosylase (LT) with a conserved sequence pattern suggesting similarity to the Slt70, a 70kda soluble lytic transglycosylase which also has an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
pfam01464 | SLT | 2.32e-31 | 175 | 266 | 4 | 101 | Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems. |
cd13403 | MLTF-like | 7.89e-30 | 172 | 264 | 1 | 99 | membrane-bound lytic murein transglycosylase F (MLTF) and similar proteins. This subfamily includes membrane-bound lytic murein transglycosylase F (MltF, murein lyase F) that degrades murein glycan strands. It is responsible for catalyzing the release of 1,6-anhydromuropeptides from peptidoglycan. Lytic transglycosylase catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do goose-type lysozymes. However, in addition, it also makes a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QDL27527.1 | 1.76e-186 | 1 | 297 | 1 | 299 |
BBO51081.1 | 3.00e-186 | 1 | 297 | 1 | 304 |
ACF51065.1 | 3.00e-186 | 1 | 297 | 1 | 304 |
QGL75577.1 | 3.00e-186 | 1 | 297 | 1 | 304 |
ARZ73969.1 | 7.69e-186 | 1 | 297 | 1 | 301 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
5MPQ_A | 1.53e-12 | 168 | 290 | 416 | 555 | BulgecinA: The key to a broad-spectrum inhibitor that targets lytic transglycosylases [Neisseria meningitidis] |
5O1J_A | 1.53e-12 | 168 | 290 | 420 | 559 | Lytictransglycosylase in action [Neisseria meningitidis MC58] |
6FPN_B | 1.54e-12 | 168 | 290 | 426 | 565 | Lytictransglycosylase in action [Neisseria meningitidis MC58] |
5O24_A | 1.55e-12 | 168 | 290 | 430 | 569 | Lytictransglycosylase in action [Neisseria meningitidis] |
5O29_A | 1.55e-12 | 168 | 290 | 436 | 575 | Lytictransglycosylase in action [Neisseria meningitidis] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
O31608 | 5.79e-35 | 118 | 283 | 17 | 175 | Putative murein lytic transglycosylase YjbJ OS=Bacillus subtilis (strain 168) OX=224308 GN=yjbJ PE=3 SV=1 |
O31976 | 1.57e-27 | 168 | 283 | 1422 | 1537 | SPbeta prophage-derived uncharacterized transglycosylase YomI OS=Bacillus subtilis (strain 168) OX=224308 GN=yomI PE=3 SV=2 |
O64046 | 1.57e-27 | 168 | 283 | 1422 | 1537 | Probable tape measure protein OS=Bacillus phage SPbeta OX=66797 GN=yomI PE=3 SV=1 |
P27380 | 1.71e-11 | 172 | 260 | 11 | 98 | Transglycosylase OS=Enterobacteria phage PRD1 OX=10658 GN=VII PE=1 SV=3 |
A8ZWR8 | 2.34e-11 | 168 | 264 | 286 | 388 | Membrane-bound lytic murein transglycosylase F OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=mltF PE=3 SV=2 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000278 | 0.999094 | 0.000175 | 0.000148 | 0.000139 | 0.000134 |
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