Species | Staphylococcus capitis | |||||||||||
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Lineage | Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus capitis | |||||||||||
CAZyme ID | MGYG000003401_00665 | |||||||||||
CAZy Family | GH23 | |||||||||||
CAZyme Description | putative transglycosylase SceD | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 24545; End: 25270 Strand: - |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
pfam06737 | Transglycosylas | 1.72e-21 | 166 | 241 | 2 | 75 | Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues. |
cd13925 | RPF | 5.53e-18 | 167 | 240 | 1 | 70 | core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF. |
cd00736 | lambda_lys-like | 1.08e-04 | 187 | 235 | 51 | 94 | Bacteriophage lambda lysozyme and similar proteins. Lysozyme from bacteriophage lambda hydrolyzes the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes. However, unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan, but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli, though they differ structurally. |
cd13402 | LT_TF-like | 0.002 | 168 | 211 | 3 | 53 | lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
ATN02268.1 | 4.24e-115 | 1 | 241 | 1 | 241 |
QOX60285.1 | 4.24e-115 | 1 | 241 | 1 | 241 |
BAW90314.1 | 4.24e-115 | 1 | 241 | 1 | 241 |
AKL92382.1 | 4.24e-115 | 1 | 241 | 1 | 241 |
QKH90611.1 | 4.24e-115 | 1 | 241 | 1 | 241 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q4L7X7 | 1.84e-87 | 1 | 241 | 1 | 235 | Probable transglycosylase SceD OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=sceD PE=3 SV=1 |
Q5HMC6 | 1.92e-83 | 1 | 241 | 1 | 219 | Probable transglycosylase SceD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=sceD PE=3 SV=1 |
Q8CMK7 | 1.92e-83 | 1 | 241 | 1 | 219 | Probable transglycosylase SceD OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=sceD PE=3 SV=1 |
A6QIT9 | 4.73e-77 | 1 | 241 | 1 | 231 | Probable transglycosylase SceD OS=Staphylococcus aureus (strain Newman) OX=426430 GN=sceD PE=3 SV=1 |
Q2FWF8 | 4.73e-77 | 1 | 241 | 1 | 231 | Probable transglycosylase SceD OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=sceD PE=1 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.000357 | 0.998871 | 0.000215 | 0.000209 | 0.000172 | 0.000154 |
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