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CAZyme Information: MGYG000003401_00665

You are here: Home > Sequence: MGYG000003401_00665

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Staphylococcus capitis
Lineage Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus capitis
CAZyme ID MGYG000003401_00665
CAZy Family GH23
CAZyme Description putative transglycosylase SceD
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
241 25420.14 5.5089
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003401 2394594 MAG United States North America
Gene Location Start: 24545;  End: 25270  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003401_00665.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam06737 Transglycosylas 1.72e-21 166 241 2 75
Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.
cd13925 RPF 5.53e-18 167 240 1 70
core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.
cd00736 lambda_lys-like 1.08e-04 187 235 51 94
Bacteriophage lambda lysozyme and similar proteins. Lysozyme from bacteriophage lambda hydrolyzes the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes. However, unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan, but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli, though they differ structurally.
cd13402 LT_TF-like 0.002 168 211 3 53
lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATN02268.1 4.24e-115 1 241 1 241
QOX60285.1 4.24e-115 1 241 1 241
BAW90314.1 4.24e-115 1 241 1 241
AKL92382.1 4.24e-115 1 241 1 241
QKH90611.1 4.24e-115 1 241 1 241

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q4L7X7 1.84e-87 1 241 1 235
Probable transglycosylase SceD OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=sceD PE=3 SV=1
Q5HMC6 1.92e-83 1 241 1 219
Probable transglycosylase SceD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=sceD PE=3 SV=1
Q8CMK7 1.92e-83 1 241 1 219
Probable transglycosylase SceD OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=sceD PE=3 SV=1
A6QIT9 4.73e-77 1 241 1 231
Probable transglycosylase SceD OS=Staphylococcus aureus (strain Newman) OX=426430 GN=sceD PE=3 SV=1
Q2FWF8 4.73e-77 1 241 1 231
Probable transglycosylase SceD OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=sceD PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000357 0.998871 0.000215 0.000209 0.000172 0.000154

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003401_00665.