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CAZyme Information: MGYG000003403_01439
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Stenotrophomonas maltophilia_AM | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia_AM | |||||||||||
| CAZyme ID | MGYG000003403_01439 | |||||||||||
| CAZy Family | PL5 | |||||||||||
| CAZyme Description | Polysaccharide lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 280946; End: 281944 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL5 | 22 | 299 | 3e-97 | 0.9053627760252366 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00325 | algL | 1.17e-121 | 30 | 326 | 56 | 359 | polysaccharide lyase. |
| cd00244 | AlgLyase | 4.98e-58 | 57 | 322 | 64 | 339 | Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond. |
| pfam05426 | Alginate_lyase | 2.75e-49 | 33 | 270 | 1 | 274 | Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QPX93116.1 | 3.36e-249 | 1 | 332 | 1 | 332 |
| VEE52398.1 | 5.58e-248 | 1 | 332 | 1 | 332 |
| QGL92081.1 | 2.54e-244 | 1 | 332 | 1 | 332 |
| ASE52599.1 | 1.28e-230 | 6 | 332 | 5 | 331 |
| QNG81436.1 | 5.23e-230 | 6 | 332 | 5 | 331 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7FHU_A | 1.36e-225 | 23 | 332 | 1 | 310 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHU_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI0_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI1_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FHZ_A | 6.08e-225 | 23 | 331 | 1 | 309 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FI2_A | 4.56e-224 | 23 | 332 | 1 | 310 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 4OZV_A | 1.91e-35 | 49 | 319 | 55 | 331 | CrystalStructure of the periplasmic alginate lyase AlgL [Pseudomonas aeruginosa PAO1] |
| 4OZW_A | 5.29e-34 | 49 | 319 | 55 | 331 | CrystalStructure of the periplasmic alginate lyase AlgL H202A mutant [Pseudomonas aeruginosa PAO1] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| B2FHL8 | 4.26e-230 | 6 | 332 | 5 | 331 | Polysaccharide lyase OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=Smlt1473 PE=1 SV=1 |
| B0KGQ9 | 2.47e-45 | 23 | 319 | 50 | 356 | Alginate lyase OS=Pseudomonas putida (strain GB-1) OX=76869 GN=algL PE=3 SV=1 |
| A5W8V4 | 3.46e-45 | 23 | 319 | 50 | 356 | Alginate lyase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) OX=351746 GN=algL PE=3 SV=1 |
| Q88ND1 | 7.43e-45 | 23 | 319 | 54 | 360 | Alginate lyase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=algL PE=3 SV=1 |
| Q4KHY5 | 2.86e-44 | 23 | 319 | 54 | 360 | Alginate lyase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=algL PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.002038 | 0.967196 | 0.029852 | 0.000389 | 0.000263 | 0.000240 |