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CAZyme Information: MGYG000003448_00454
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | RC9 sp900767405 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; UBA932; RC9; RC9 sp900767405 | |||||||||||
| CAZyme ID | MGYG000003448_00454 | |||||||||||
| CAZy Family | GH78 | |||||||||||
| CAZyme Description | L-rhamnose-proton symporter | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 692; End: 3424 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH78 | 398 | 907 | 1.9e-93 | 0.9781746031746031 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK13499 | PRK13499 | 4.86e-113 | 1 | 331 | 4 | 339 | L-rhamnose/proton symporter RhaT. |
| pfam06379 | RhaT | 3.36e-45 | 2 | 327 | 5 | 334 | L-rhamnose-proton symport protein (RhaT). This family consists of several bacterial L-rhamnose-proton symport protein (RhaT) sequences. |
| pfam17389 | Bac_rhamnosid6H | 8.96e-15 | 507 | 848 | 4 | 340 | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. |
| pfam17390 | Bac_rhamnosid_C | 6.01e-04 | 850 | 887 | 1 | 39 | Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QUT48045.1 | 4.05e-217 | 352 | 910 | 26 | 583 |
| QJE27358.1 | 1.57e-216 | 351 | 908 | 26 | 580 |
| QUT95156.1 | 1.62e-216 | 351 | 908 | 26 | 580 |
| AST53793.1 | 1.62e-216 | 351 | 908 | 26 | 580 |
| QUT19201.1 | 2.22e-216 | 351 | 908 | 26 | 580 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3CIH_A | 1.50e-38 | 395 | 886 | 188 | 674 | Crystalstructure of a putative alpha-rhamnosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482] |
| 2OKX_A | 6.98e-36 | 472 | 908 | 502 | 937 | Crystalstructure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A [Bacillus sp. GL1],2OKX_B Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A [Bacillus sp. GL1] |
| 4XHC_A | 2.62e-11 | 400 | 849 | 94 | 543 | ChainA, Alpha-L-rhamnosidase [Klebsiella oxytoca],4XHC_B Chain B, Alpha-L-rhamnosidase [Klebsiella oxytoca] |
| 6I60_A | 4.53e-08 | 395 | 621 | 360 | 587 | Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q65Q27 | 7.64e-47 | 2 | 327 | 5 | 334 | L-rhamnose-proton symporter OS=Mannheimia succiniciproducens (strain MBEL55E) OX=221988 GN=rhaT PE=3 SV=1 |
| B2K1W7 | 3.60e-46 | 2 | 327 | 5 | 334 | L-rhamnose-proton symporter OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) OX=502801 GN=rhaT PE=3 SV=1 |
| Q66FF0 | 3.60e-46 | 2 | 327 | 5 | 334 | L-rhamnose-proton symporter OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=rhaT PE=3 SV=1 |
| B1JNC3 | 3.60e-46 | 2 | 327 | 5 | 334 | L-rhamnose-proton symporter OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) OX=502800 GN=rhaT PE=3 SV=1 |
| A4TRS5 | 3.60e-46 | 2 | 327 | 5 | 334 | L-rhamnose-proton symporter OS=Yersinia pestis (strain Pestoides F) OX=386656 GN=rhaT PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000024 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
TMHMM Annotations download full data without filtering help
| start | end |
|---|---|
| 4 | 23 |
| 35 | 57 |
| 72 | 91 |
| 98 | 120 |
| 130 | 152 |
| 173 | 195 |
| 205 | 227 |
| 248 | 270 |
| 280 | 302 |
| 314 | 331 |