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CAZyme Information: MGYG000003449_01014

You are here: Home > Sequence: MGYG000003449_01014

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species CAG-312 sp002405555
Lineage Bacteria; Verrucomicrobiota; Verrucomicrobiae; Opitutales; CAG-312; CAG-312; CAG-312 sp002405555
CAZyme ID MGYG000003449_01014
CAZy Family GH39
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
643 MGYG000003449_10|CGC1 72409.12 9.0471
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003449 2395522 MAG Fiji Oceania
Gene Location Start: 128007;  End: 129938  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003449_01014.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH39 75 267 7.5e-25 0.5220417633410673

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3693 XynA 1.38e-05 69 249 69 258
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
cd21510 agarase_cat 2.66e-04 112 265 71 256
alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.
COG1874 GanA 0.001 34 185 18 201
Beta-galactosidase GanA [Carbohydrate transport and metabolism].
COG2723 BglB 0.006 53 174 66 199
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].
pfam11790 Glyco_hydro_cc 0.007 199 250 127 170
Glycosyl hydrolase catalytic core. This family is probably a glycosyl hydrolase, and is conserved in fungi and some Proteobacteria. The pombe member is annotated as being from IPR013781.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AVM44885.1 1.18e-121 15 611 12 590
QDU57372.1 1.84e-75 32 637 28 626
AVM44901.1 4.16e-60 25 595 18 592
AHF90941.1 9.96e-41 26 587 226 803
ACZ43011.1 1.77e-29 32 258 302 534

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000269 0.999009 0.000237 0.000166 0.000147 0.000137

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003449_01014.