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CAZyme Information: MGYG000003494_01201

You are here: Home > Sequence: MGYG000003494_01201

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminiclostridium_E sp900768735
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminiclostridium_E; Ruminiclostridium_E sp900768735
CAZyme ID MGYG000003494_01201
CAZy Family GH5
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
400 MGYG000003494_263|CGC1 45459.67 4.3334
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003494 2318157 MAG Fiji Oceania
Gene Location Start: 7873;  End: 9075  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003494_01201.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH5 64 354 1.1e-44 0.9901639344262295

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd21510 agarase_cat 0.009 181 289 77 187
alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16471.1 8.75e-117 13 382 6 361
CCO03823.1 7.34e-109 6 382 3 396
ADD61974.1 5.20e-103 6 382 3 405
ADU21807.1 6.91e-95 49 382 72 407
QHW32544.1 2.06e-93 51 358 36 344

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000000 0.000002 1.000042 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003494_01201.