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CAZyme Information: MGYG000003512_02445

You are here: Home > Sequence: MGYG000003512_02445

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA11524 sp900769075
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; CAG-74; UBA11524; UBA11524 sp900769075
CAZyme ID MGYG000003512_02445
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
521 58111.04 5.0994
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003512 2777574 MAG Fiji Oceania
Gene Location Start: 4192;  End: 5757  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003512_02445.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 62 456 2.3e-48 0.9323076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 5.04e-30 29 390 72 412
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03003 PLN03003 9.47e-05 214 382 137 297
Probable polygalacturonase At3g15720
pfam13229 Beta_helix 1.72e-04 242 370 3 112
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam00295 Glyco_hydro_28 6.67e-04 247 379 116 252
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AOZ96985.1 5.28e-124 2 518 1 531
SDU05910.1 1.11e-48 50 520 30 456
CCW36339.1 1.00e-47 41 521 30 470
QEE27992.1 6.70e-47 40 520 30 461
AWG23677.1 1.39e-42 41 520 28 472

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4MXN_A 2.55e-08 41 305 22 239
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]
3JUR_A 3.70e-07 32 337 17 316
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 4.23e-13 45 385 67 370
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P27644 7.37e-06 206 376 12 186
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000057 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003512_02445.