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CAZyme Information: MGYG000003550_01986

You are here: Home > Sequence: MGYG000003550_01986

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridium sp900769625
Lineage Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium sp900769625
CAZyme ID MGYG000003550_01986
CAZy Family GH18
CAZyme Description Putative sporulation-specific glycosylase YdhD
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
346 40060.41 4.693
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003550 3104477 MAG Fiji Oceania
Gene Location Start: 24548;  End: 25588  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003550_01986.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd02874 GH18_CFLE_spore_hydrolase 9.35e-28 55 342 8 303
Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
cd06549 GH18_trifunctional 4.16e-20 115 343 66 292
GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
COG3858 YaaH 5.40e-18 136 342 185 408
Spore germination protein YaaH [Cell cycle control, cell division, chromosome partitioning].
cd02876 GH18_SI-CLP 2.25e-08 125 342 75 308
Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
pfam00704 Glyco_hydro_18 1.00e-06 135 326 81 300
Glycosyl hydrolases family 18.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QGH23454.1 2.47e-177 1 346 1 343
QGH27498.1 2.47e-177 1 346 1 343
QCJ05750.1 4.97e-177 1 346 1 343
QJU43188.1 4.97e-177 1 346 1 343
QSX02303.1 4.97e-177 1 346 1 343

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4S3J_A 9.52e-10 124 342 180 411
Crystalstructure of the Bacillus cereus spore cortex-lytic enzyme SleL [Bacillus cereus ATCC 10876],4S3J_B Crystal structure of the Bacillus cereus spore cortex-lytic enzyme SleL [Bacillus cereus ATCC 10876],4S3J_C Crystal structure of the Bacillus cereus spore cortex-lytic enzyme SleL [Bacillus cereus ATCC 10876]
4S3K_A 4.00e-08 134 342 188 413
ChainA, Spore germination protein YaaH [Priestia megaterium QM B1551]
3CZ8_A 6.89e-08 132 341 85 308
ChainA, Putative sporulation-specific glycosylase ydhD [Bacillus subtilis subsp. subtilis str. 168],3CZ8_B Chain B, Putative sporulation-specific glycosylase ydhD [Bacillus subtilis subsp. subtilis str. 168]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0DPJ9 5.18e-09 124 342 179 410
Cortical fragment-lytic enzyme OS=Bacillus anthracis OX=1392 GN=sleL PE=2 SV=1
Q9K3E4 6.91e-09 124 342 179 410
Cortical fragment-lytic enzyme OS=Bacillus cereus OX=1396 GN=sleL PE=1 SV=1
O05495 6.76e-08 132 341 177 400
Putative sporulation-specific glycosylase YdhD OS=Bacillus subtilis (strain 168) OX=224308 GN=ydhD PE=1 SV=2
P37531 2.89e-07 136 342 186 409
Cortical fragment-lytic enzyme OS=Bacillus subtilis (strain 168) OX=224308 GN=sleL PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000000 0.000001 1.000071 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

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