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CAZyme Information: MGYG000003697_03188
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Prevotella copri_A | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella copri_A | |||||||||||
| CAZyme ID | MGYG000003697_03188 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2928; End: 4496 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 88 | 428 | 1.3e-49 | 0.9076923076923077 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 2.18e-25 | 59 | 355 | 83 | 403 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam00295 | Glyco_hydro_28 | 2.49e-23 | 135 | 428 | 38 | 307 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN02218 | PLN02218 | 8.49e-22 | 53 | 428 | 62 | 412 | polygalacturonase ADPG |
| PLN03003 | PLN03003 | 4.01e-18 | 54 | 389 | 19 | 328 | Probable polygalacturonase At3g15720 |
| PLN02188 | PLN02188 | 2.99e-15 | 55 | 365 | 33 | 325 | polygalacturonase/glycoside hydrolase family protein |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QNT65232.1 | 1.44e-301 | 1 | 471 | 1 | 476 |
| QEC72689.1 | 4.94e-74 | 42 | 461 | 46 | 437 |
| BAV07348.1 | 1.77e-66 | 45 | 460 | 41 | 429 |
| AYD47266.1 | 3.06e-55 | 43 | 447 | 23 | 414 |
| QEC57624.1 | 1.03e-53 | 43 | 447 | 25 | 416 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1BHE_A | 9.11e-23 | 74 | 390 | 26 | 343 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 1IA5_A | 1.17e-11 | 155 | 428 | 72 | 325 | PolygalacturonaseFrom Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus] |
| 5OLP_A | 8.08e-06 | 59 | 442 | 45 | 445 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P18192 | 1.12e-22 | 43 | 419 | 27 | 400 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
| P26509 | 6.73e-22 | 74 | 390 | 52 | 369 | Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1 |
| Q9SFB7 | 6.46e-15 | 54 | 432 | 66 | 418 | Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2 |
| O74213 | 8.14e-11 | 155 | 428 | 111 | 364 | Endopolygalacturonase I OS=Aspergillus aculeatus OX=5053 GN=pgaI PE=1 SV=1 |
| O23147 | 3.16e-10 | 56 | 333 | 65 | 333 | Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000536 | 0.997828 | 0.001062 | 0.000185 | 0.000185 | 0.000165 |