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CAZyme Information: MGYG000003704_00597
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | UBA4877 sp002399345 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Thermoanaerobacteria; Caldanaerobiales; UBA4877; UBA4877; UBA4877 sp002399345 | |||||||||||
| CAZyme ID | MGYG000003704_00597 | |||||||||||
| CAZy Family | CBM50 | |||||||||||
| CAZyme Description | putative protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 105; End: 431 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd00118 | LysM | 2.13e-17 | 56 | 100 | 1 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
| smart00257 | LysM | 7.59e-16 | 58 | 100 | 2 | 44 | Lysin motif. |
| PRK06347 | PRK06347 | 2.82e-15 | 5 | 100 | 481 | 591 | 1,4-beta-N-acetylmuramoylhydrolase. |
| pfam01476 | LysM | 2.82e-15 | 58 | 100 | 1 | 42 | LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. |
| cd00118 | LysM | 9.07e-13 | 5 | 48 | 2 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ACQ70847.1 | 2.84e-25 | 6 | 100 | 296 | 394 |
| QPI67555.1 | 2.87e-25 | 6 | 100 | 297 | 395 |
| QBR21630.1 | 3.93e-24 | 5 | 98 | 217 | 311 |
| AVI47066.1 | 3.93e-24 | 5 | 98 | 217 | 311 |
| QAT54916.1 | 7.69e-24 | 5 | 98 | 217 | 311 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5JCD_A | 1.90e-09 | 5 | 98 | 84 | 189 | Crystalstructure of OsCEBiP [Oryza sativa Japonica Group],5JCD_B Crystal structure of OsCEBiP [Oryza sativa Japonica Group],5JCD_C Crystal structure of OsCEBiP [Oryza sativa Japonica Group] |
| 5JCE_A | 3.56e-09 | 5 | 98 | 84 | 189 | Crystalstructure of OsCEBiP complex [Oryza sativa Japonica Group],5JCE_B Crystal structure of OsCEBiP complex [Oryza sativa Japonica Group] |
| 6Q40_A | 1.82e-06 | 6 | 52 | 21 | 70 | ChainA, LysM domain-containing protein [Zymoseptoria tritici IPO323],6Q40_B Chain B, LysM domain-containing protein [Zymoseptoria tritici IPO323],6Q40_C Chain C, LysM domain-containing protein [Zymoseptoria tritici IPO323],6Q40_D Chain D, LysM domain-containing protein [Zymoseptoria tritici IPO323] |
| 4S3K_A | 2.78e-06 | 58 | 100 | 7 | 49 | ChainA, Spore germination protein YaaH [Priestia megaterium QM B1551] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q49UX4 | 1.23e-13 | 6 | 98 | 88 | 191 | N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sle1 PE=3 SV=1 |
| O07532 | 2.39e-11 | 8 | 98 | 31 | 133 | Peptidoglycan endopeptidase LytF OS=Bacillus subtilis (strain 168) OX=224308 GN=lytF PE=1 SV=2 |
| P37710 | 4.64e-11 | 6 | 100 | 567 | 674 | Autolysin OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=EF_0799 PE=1 SV=2 |
| Q8CMN2 | 5.18e-11 | 5 | 98 | 85 | 188 | N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=sle1 PE=3 SV=1 |
| Q5HRU2 | 5.18e-11 | 5 | 98 | 85 | 188 | N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=sle1 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.999965 | 0.000069 | 0.000001 | 0.000000 | 0.000000 | 0.000000 |