Species | Garciella sp900555725 | |||||||||||
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Lineage | Bacteria; Firmicutes_A; Clostridia; Eubacteriales; Garciellaceae; Garciella; Garciella sp900555725 | |||||||||||
CAZyme ID | MGYG000003705_00199 | |||||||||||
CAZy Family | CBM50 | |||||||||||
CAZyme Description | putative peptidoglycan endopeptidase LytE | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 12278; End: 12808 Strand: + |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
smart00257 | LysM | 1.92e-16 | 73 | 115 | 2 | 44 | Lysin motif. |
cd00118 | LysM | 5.00e-16 | 73 | 115 | 3 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
cd00118 | LysM | 7.35e-15 | 15 | 57 | 3 | 45 | Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. |
pfam01476 | LysM | 8.38e-14 | 73 | 116 | 1 | 43 | LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. |
smart00257 | LysM | 2.20e-13 | 132 | 174 | 2 | 44 | Lysin motif. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
ABW19482.1 | 4.12e-70 | 8 | 175 | 419 | 588 |
QUH21634.1 | 1.03e-69 | 7 | 175 | 11 | 182 |
ACV62122.1 | 7.19e-64 | 3 | 176 | 8 | 179 |
ADG81515.1 | 6.17e-62 | 8 | 176 | 10 | 173 |
QAT63505.1 | 8.69e-60 | 6 | 175 | 102 | 269 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
4B8V_A | 5.64e-21 | 9 | 176 | 38 | 218 | ChainA, Extracellular Protein 6 [Fulvia fulva],4B9H_A Chain A, Extracellular Protein 6 [Fulvia fulva] |
5K2L_A | 9.17e-09 | 15 | 58 | 5 | 48 | Crystalstructure of LysM domain from Volvox carteri chitinase [Volvox carteri f. nagariensis],5YZK_A Solution structure of LysM domain from a chitinase derived from Volvox carteri [Volvox carteri f. nagariensis] |
5YZ6_A | 1.33e-07 | 73 | 116 | 5 | 48 | Solutionstructure of LysM domain from a chitinase derived from Volvox carteri [Volvox carteri f. nagariensis] |
5BUM_A | 3.69e-07 | 73 | 115 | 6 | 48 | CrystalStructure of LysM domain from Equisetum arvense chitinase A [Equisetum arvense],5BUM_B Crystal Structure of LysM domain from Equisetum arvense chitinase A [Equisetum arvense] |
4PXV_A | 9.79e-07 | 73 | 115 | 5 | 47 | CrystalStructure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],4PXV_B Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],4PXV_C Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],4PXV_D Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],5YLG_A Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],5YLG_B Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],5YLG_C Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],5YLG_D Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
O05495 | 9.16e-11 | 13 | 138 | 2 | 112 | Putative sporulation-specific glycosylase YdhD OS=Bacillus subtilis (strain 168) OX=224308 GN=ydhD PE=1 SV=2 |
P07540 | 4.23e-09 | 73 | 172 | 163 | 255 | Endolysin OS=Bacillus phage PZA OX=10757 GN=15 PE=3 SV=1 |
P11187 | 4.23e-09 | 73 | 172 | 163 | 255 | Endolysin OS=Bacillus phage phi29 OX=10756 GN=15 PE=1 SV=1 |
Q9P403 | 3.92e-07 | 17 | 116 | 112 | 228 | Intracellular hyphae protein 1 OS=Colletotrichum lindemuthianum OX=290576 GN=CIH1 PE=1 SV=1 |
Q7A123 | 1.13e-06 | 11 | 67 | 173 | 229 | Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain MW2) OX=196620 GN=lytN PE=3 SV=2 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000050 | 0.000003 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
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