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CAZyme Information: MGYG000003734_04100

You are here: Home > Sequence: MGYG000003734_04100

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Afipia broomeae
Lineage Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Afipia; Afipia broomeae
CAZyme ID MGYG000003734_04100
CAZy Family GT83
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
521 57676.38 9.7341
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003734 5238503 MAG Canada North America
Gene Location Start: 8000;  End: 9565  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003734_04100.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT83 21 385 7e-50 0.6796296296296296

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13231 PMT_2 5.50e-40 63 224 1 160
Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.
COG1807 ArnT 3.13e-28 46 385 46 389
4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family [Cell wall/membrane/envelope biogenesis].
PRK13279 arnT 1.78e-05 46 303 32 307
lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase.
COG5305 COG5305 4.18e-05 56 305 89 326
Uncharacterized membrane protein [Function unknown].
pfam02366 PMT 0.001 78 204 77 208
Dolichyl-phosphate-mannose-protein mannosyltransferase. This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins EC:2.4.1.109. These proteins are responsible for O-linked glycosylation of proteins, they catalyze the reaction:- Dolichyl phosphate D-mannose + protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to pfam02516 (A Bateman pers. obs.). This family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose lipid A transferase). They catalyze the addition of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety of the lipopolysaccharide. This is a critical modification enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) to resist killing by antimicrobial peptides such as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase are predicted to have 12 trans-membrane regions. The N-terminal portion of these proteins is hypothesized to have a conserved glycosylation activity which is shared between distantly related oligosaccharyltransferases ArnT and PglB families.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QPF88307.1 1.70e-195 33 520 4 492
QPF82639.1 1.99e-53 31 495 20 479
BCT68390.1 9.90e-47 27 368 402 738
BCT66805.1 4.96e-42 27 296 375 632
QPB22219.1 3.59e-41 30 439 398 808

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q1MLH5 3.17e-19 42 427 27 397
Lipid A galacturonosyltransferase RgtD OS=Rhizobium leguminosarum bv. viciae (strain 3841) OX=216596 GN=rgtD PE=3 SV=1
Q4K884 6.49e-08 46 303 64 338
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase 2 OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=arnT2 PE=3 SV=1
B4TBG8 8.24e-08 46 292 32 294
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella heidelberg (strain SL476) OX=454169 GN=arnT PE=3 SV=1
Q57M54 3.31e-07 46 292 31 293
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella choleraesuis (strain SC-B67) OX=321314 GN=arnT PE=3 SV=2
A9MJC5 4.38e-07 46 292 32 294
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 GN=arnT PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000008 0.000002 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

start end
19 41
84 106
113 135
139 156
163 194
204 226
256 278
288 305
318 335
350 372