Species | Afipia broomeae | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Afipia; Afipia broomeae | |||||||||||
CAZyme ID | MGYG000003734_04100 | |||||||||||
CAZy Family | GT83 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 8000; End: 9565 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
GT83 | 21 | 385 | 7e-50 | 0.6796296296296296 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
pfam13231 | PMT_2 | 5.50e-40 | 63 | 224 | 1 | 160 | Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366. |
COG1807 | ArnT | 3.13e-28 | 46 | 385 | 46 | 389 | 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferase of PMT family [Cell wall/membrane/envelope biogenesis]. |
PRK13279 | arnT | 1.78e-05 | 46 | 303 | 32 | 307 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase. |
COG5305 | COG5305 | 4.18e-05 | 56 | 305 | 89 | 326 | Uncharacterized membrane protein [Function unknown]. |
pfam02366 | PMT | 0.001 | 78 | 204 | 77 | 208 | Dolichyl-phosphate-mannose-protein mannosyltransferase. This is a family of Dolichyl-phosphate-mannose-protein mannosyltransferase proteins EC:2.4.1.109. These proteins are responsible for O-linked glycosylation of proteins, they catalyze the reaction:- Dolichyl phosphate D-mannose + protein <=> dolichyl phosphate + O-D-mannosyl-protein. Also in this family is Drosophila rotated abdomen protein which is a putative mannosyltransferase. This family appears to be distantly related to pfam02516 (A Bateman pers. obs.). This family also contains sequences from ArnTs (4-amino-4-deoxy-L-arabinose lipid A transferase). They catalyze the addition of 4-amino-4-deoxy-l-arabinose (l-Ara4N) to the lipid A moiety of the lipopolysaccharide. This is a critical modification enabling bacteria (e.g. Escherichia coli and Salmonella typhimurium) to resist killing by antimicrobial peptides such as polymyxins. Members such as undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase are predicted to have 12 trans-membrane regions. The N-terminal portion of these proteins is hypothesized to have a conserved glycosylation activity which is shared between distantly related oligosaccharyltransferases ArnT and PglB families. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
QPF88307.1 | 1.70e-195 | 33 | 520 | 4 | 492 |
QPF82639.1 | 1.99e-53 | 31 | 495 | 20 | 479 |
BCT68390.1 | 9.90e-47 | 27 | 368 | 402 | 738 |
BCT66805.1 | 4.96e-42 | 27 | 296 | 375 | 632 |
QPB22219.1 | 3.59e-41 | 30 | 439 | 398 | 808 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
Q1MLH5 | 3.17e-19 | 42 | 427 | 27 | 397 | Lipid A galacturonosyltransferase RgtD OS=Rhizobium leguminosarum bv. viciae (strain 3841) OX=216596 GN=rgtD PE=3 SV=1 |
Q4K884 | 6.49e-08 | 46 | 303 | 64 | 338 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase 2 OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=arnT2 PE=3 SV=1 |
B4TBG8 | 8.24e-08 | 46 | 292 | 32 | 294 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella heidelberg (strain SL476) OX=454169 GN=arnT PE=3 SV=1 |
Q57M54 | 3.31e-07 | 46 | 292 | 31 | 293 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella choleraesuis (strain SC-B67) OX=321314 GN=arnT PE=3 SV=2 |
A9MJC5 | 4.38e-07 | 46 | 292 | 32 | 294 | Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514 GN=arnT PE=3 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
1.000008 | 0.000002 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |
start | end |
---|---|
19 | 41 |
84 | 106 |
113 | 135 |
139 | 156 |
163 | 194 |
204 | 226 |
256 | 278 |
288 | 305 |
318 | 335 |
350 | 372 |
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