logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003934_01229

You are here: Home > Sequence: MGYG000003934_01229

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; Borkfalkiaceae; Borkfalkia;
CAZyme ID MGYG000003934_01229
CAZy Family GH23
CAZyme Description DNA mismatch repair protein MutS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
4263 489132.88 4.5178
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003934 2233390 MAG United Kingdom Europe
Gene Location Start: 23048;  End: 35839  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003934_01229.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4646 COG4646 1.74e-75 1371 1900 1 540
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
pfam12960 DUF3849 1.69e-36 3417 3539 1 124
Protein of unknown function (DUF3849). A family of uncharacterized proteins found by clustering human gut metagenomic sequences. This domain frequently seen with DUF3848.
COG4646 COG4646 2.39e-25 2031 2234 427 637
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
COG4983 COG4983 8.48e-25 3968 4228 9 268
Uncharacterized protein, contains Primase-polymerase (Primpol) domain [Function unknown].
pfam01624 MutS_I 2.41e-21 264 351 2 90
MutS domain I. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam00488, pfam05188, pfam05192 and pfam05190. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with globular domain I, which is involved in DNA binding, in Thermus aquaticus MutS as characterized in.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ASV45029.1 2.07e-297 1076 2609 1553 3155
QIW86704.1 4.21e-295 1076 2609 1621 3223
QIW86628.1 4.21e-295 1076 2609 1621 3223
AXF51455.1 6.71e-279 1081 2604 1792 3387
AEY69616.1 2.40e-278 1081 2604 1699 3294

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7RR4_A 7.33e-18 3978 4239 17 271
ChainA, Primase [Nitratiruptor phage NrS-1]
6K9A_A 2.44e-17 3978 4239 18 272
Thecomplex of NrS-1 N terminal domain (1-305) with dGTP [Nitratiruptor phage NrS-1],6K9B_A Apo structure of NrS-1 N terminal domain N305 [Nitratiruptor phage NrS-1],6K9B_B Apo structure of NrS-1 N terminal domain N305 [Nitratiruptor phage NrS-1]
6A9W_A 3.04e-17 3978 4239 37 291
Structureof the bifunctional DNA primase-polymerase from phage NrS-1 [Nitratiruptor phage NrS-1],6JON_A Crystal structures of phage NrS-1 N300-dNTPs-Mg2+ complex provide molecular mechanisms for substrate specificity [Nitratiruptor phage NrS-1],6JOP_A Crystal structures of phage NrS-1 N300-dNTPs-Mg2+ complex provide molecular mechanisms for substrate specificity [Nitratiruptor phage NrS-1],6JOQ_A Crystal structures of phage NrS-1 N300-dNTPs-Mg2+ complex provide molecular mechanisms for substrate specificity [Nitratiruptor phage NrS-1]
7RR3_A 1.20e-15 3978 4239 17 271
ChainA, Primase [Nitratiruptor phage NrS-1]
5AKB_A 1.28e-10 263 350 11 99
MutSin complex with the N-terminal domain of MutL - crystal form 1 [Escherichia coli K-12],5AKB_B MutS in complex with the N-terminal domain of MutL - crystal form 1 [Escherichia coli K-12],5AKB_E MutS in complex with the N-terminal domain of MutL - crystal form 1 [Escherichia coli K-12],5AKC_A MutS in complex with the N-terminal domain of MutL - crystal form 2 [Escherichia coli K-12],5AKC_B MutS in complex with the N-terminal domain of MutL - crystal form 2 [Escherichia coli K-12],5AKC_E MutS in complex with the N-terminal domain of MutL - crystal form 2 [Escherichia coli K-12],5AKC_F MutS in complex with the N-terminal domain of MutL - crystal form 2 [Escherichia coli K-12],5AKC_I MutS in complex with the N-terminal domain of MutL - crystal form 2 [Escherichia coli K-12],5AKC_J MutS in complex with the N-terminal domain of MutL - crystal form 2 [Escherichia coli K-12],5AKD_A MutS in complex with the N-terminal domain of MutL - crystal form 3 [Escherichia coli K-12],5AKD_B MutS in complex with the N-terminal domain of MutL - crystal form 3 [Escherichia coli K-12],5AKD_E MutS in complex with the N-terminal domain of MutL - crystal form 3 [Escherichia coli K-12],5AKD_F MutS in complex with the N-terminal domain of MutL - crystal form 3 [Escherichia coli K-12],5AKD_I MutS in complex with the N-terminal domain of MutL - crystal form 3 [Escherichia coli K-12],5AKD_J MutS in complex with the N-terminal domain of MutL - crystal form 3 [Escherichia coli K-12]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q71TF8 9.24e-43 1084 2427 45 1567
Defense against restriction protein B OS=Escherichia phage P1 OX=2886926 GN=darB PE=3 SV=1
A4J5Q6 9.43e-18 262 351 3 93
DNA mismatch repair protein MutS OS=Desulfotomaculum reducens (strain MI-1) OX=349161 GN=mutS PE=3 SV=1
A0Q0M6 1.30e-15 262 350 3 92
DNA mismatch repair protein MutS OS=Clostridium novyi (strain NT) OX=386415 GN=mutS PE=3 SV=1
C5D9H5 4.82e-15 263 351 5 94
DNA mismatch repair protein MutS OS=Geobacillus sp. (strain WCH70) OX=471223 GN=mutS PE=3 SV=1
Q3A4F1 4.87e-15 262 353 4 96
DNA mismatch repair protein MutS OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=mutS PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000059 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003934_01229.