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CAZyme Information: MGYG000003992_01874

You are here: Home > Sequence: MGYG000003992_01874

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species 43-108 sp001915545
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; 43-108; 43-108 sp001915545
CAZyme ID MGYG000003992_01874
CAZy Family CBM62
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
881 MGYG000003992_26|CGC1 97393.79 4.6169
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003992 3355495 MAG United Kingdom Europe
Gene Location Start: 16491;  End: 19136  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003992_01874.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM62 771 875 2.5e-28 0.7709923664122137

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam05426 Alginate_lyase 3.62e-08 85 284 51 263
Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.
pfam07081 DUF1349 1.81e-06 534 671 33 167
Protein of unknown function (DUF1349). This family consists of several hypothetical bacterial proteins but contains one sequence from Saccharomyces cerevisiae. Members of this family are typically around 200 residues in length. The function of this family is unknown.
cd00063 FN3 2.37e-05 391 479 1 92
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
smart00060 FN3 3.14e-05 391 470 1 83
Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
smart00060 FN3 2.89e-04 681 755 1 83
Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AXP82777.1 6.72e-107 28 715 38 705
AXP82778.1 3.00e-93 3 765 2 767
BAV06996.1 1.57e-39 15 380 7 386
QDV63998.1 2.80e-36 28 364 26 352
AUS26685.1 4.07e-36 6 456 5 477

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5G56_A 1.25e-28 590 873 537 809
ChainA, Carbohydrate Binding Family 6 [Acetivibrio thermocellus]
2YB7_A 2.13e-23 770 873 6 108
ChainA, Carbohydrate Binding Family 6 [Acetivibrio thermocellus],2YB7_B Chain B, Carbohydrate Binding Family 6 [Acetivibrio thermocellus],2YFU_A Chain A, Carbohydrate Binding Family 6 [Acetivibrio thermocellus],2YFZ_A Chain A, Carbohydrate Binding Family 6 [Acetivibrio thermocellus],2YG0_A Chain A, Carbohydrate Binding Family 6 [Acetivibrio thermocellus]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000247 0.999187 0.000146 0.000143 0.000135 0.000127

TMHMM  Annotations      download full data without filtering help

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