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CAZyme Information: MGYG000004072_00525

You are here: Home > Sequence: MGYG000004072_00525

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UMGS1540 sp900552775
Lineage Bacteria; Firmicutes_A; Clostridia; UMGS1883; UMGS1883; UMGS1540; UMGS1540 sp900552775
CAZyme ID MGYG000004072_00525
CAZy Family PL35
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1247 139633.95 4.5507
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004072 2483861 MAG United Kingdom Europe
Gene Location Start: 330928;  End: 334671  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004072_00525.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL35 775 942 2.2e-44 0.9664804469273743
CBM32 1119 1242 1.2e-16 0.9193548387096774

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07833 Cu_amine_oxidN1 2.31e-16 286 371 1 86
Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.
pfam00754 F5_F8_type_C 2.13e-09 1116 1227 1 120
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam07833 Cu_amine_oxidN1 2.21e-06 235 316 17 93
Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.
pfam16332 DUF4962 1.46e-05 401 650 120 372
Domain of unknown function (DUF4962). This family consists of uncharacterized proteins around 870 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.
pfam07940 Hepar_II_III 1.48e-04 780 928 31 181
Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ALS27107.1 9.42e-149 369 1233 651 1508
QNK58643.1 3.93e-147 345 1247 725 1620
AZS17848.1 1.27e-146 9 1244 18 1277
QNK56587.1 1.44e-129 423 1247 221 1029
QUH30172.1 8.79e-128 406 1244 56 893

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3A0O_A 3.74e-06 503 1018 230 745
Crystalstructure of alginate lyase from Agrobacterium tumefaciens C58 [Agrobacterium fabrum str. C58],3A0O_B Crystal structure of alginate lyase from Agrobacterium tumefaciens C58 [Agrobacterium fabrum str. C58]
3AFL_A 4.90e-06 503 1018 230 745
Crystalstructure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide [Agrobacterium fabrum str. C58]
2FUQ_A 8.34e-06 419 940 19 535
ChainA, heparinase II protein [Pedobacter heparinus],2FUQ_B Chain B, heparinase II protein [Pedobacter heparinus]
3E80_A 8.34e-06 419 940 21 537
Structureof Heparinase II complexed with heparan sulfate degradation disaccharide product [Pedobacter heparinus],3E80_B Structure of Heparinase II complexed with heparan sulfate degradation disaccharide product [Pedobacter heparinus],3E80_C Structure of Heparinase II complexed with heparan sulfate degradation disaccharide product [Pedobacter heparinus]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000391 0.998467 0.000395 0.000241 0.000262 0.000232

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004072_00525.