logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000004087_01763

You are here: Home > Sequence: MGYG000004087_01763

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Enterocloster sp900540675
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Enterocloster; Enterocloster sp900540675
CAZyme ID MGYG000004087_01763
CAZy Family GH136
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1555 MGYG000004087_17|CGC1 170848.53 4.538
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004087 3298790 MAG United Kingdom Europe
Gene Location Start: 29522;  End: 34189  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.140

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH136 67 603 3.4e-154 0.9959266802443992
CBM40 987 1150 7e-28 0.9217877094972067

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam08428 Rib 2.90e-22 1268 1341 1 74
Rib/alpha-like repeat. The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.
pfam02973 Sialidase 2.39e-13 996 1151 24 188
Sialidase, N-terminal domain.
TIGR02331 rib_alpha 3.90e-13 1279 1341 2 66
Rib/alpha/Esp surface antigen repeat. Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.
COG5263 COG5263 1.93e-10 1396 1551 197 312
Glucan-binding domain (YG repeat) [Carbohydrate transport and metabolism].
NF033840 PspC_relate_1 7.41e-10 1408 1549 503 627
PspC-related protein choline-binding protein 1. Members of this family share C-terminal homology to the choline-binding form of the pneumococcal surface antigen PspC, but not to its allelic LPXTG-anchored forms because they lack the choline-binding repeat region. Members of this family should not be confused with PspC itself, whose identity and function reflect regions N-terminal to the choline-binding region. See Iannelli, et al. (PMID: 11891047) for information about the different allelic forms of PspC.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCT93619.1 7.64e-149 70 604 37 580
ARV05068.1 4.10e-143 68 604 35 579
ADO52688.1 4.27e-143 57 1027 23 1077
BBA48469.1 1.12e-140 57 1027 23 1077
BBA56588.1 2.89e-140 57 914 23 916

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7V6M_A 3.93e-157 66 603 7 576
ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis]
7V6I_A 1.08e-125 68 609 14 614
ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967]
6KQT_A 5.63e-125 70 478 247 644
CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099]
6KQS_A 1.25e-120 70 478 247 644
CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099]
5GQC_A 4.09e-120 68 606 18 599
Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P20533 4.01e-11 880 1111 461 669
Chitinase A1 OS=Niallia circulans OX=1397 GN=chiA1 PE=1 SV=1
Q27701 1.66e-10 969 1144 74 267
Anhydrosialidase OS=Macrobdella decora OX=6405 PE=1 SV=1
A0P8X0 4.68e-10 827 958 757 889
Alpha-amylase OS=Niallia circulans OX=1397 GN=igtZ PE=1 SV=1
P29767 5.67e-10 1019 1151 234 365
Sialidase OS=Clostridium septicum OX=1504 PE=3 SV=1
P50899 7.63e-10 880 958 700 778
Exoglucanase B OS=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) OX=590998 GN=cbhB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000272 0.998922 0.000269 0.000197 0.000164 0.000145

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004087_01763.