logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000004123_00643

You are here: Home > Sequence: MGYG000004123_00643

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Peptostreptococcales; Anaerovoracaceae; QAKD01;
CAZyme ID MGYG000004123_00643
CAZy Family SLH
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
984 105264.59 4.5679
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004123 1870626 MAG United Kingdom Europe
Gene Location Start: 90737;  End: 93691  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004123_00643.

CAZyme Signature Domains help

Family Start End Evalue family coverage
SLH 35 75 2.7e-18 0.9761904761904762
SLH 93 134 7.6e-16 0.9761904761904762

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00395 SLH 7.48e-13 35 75 1 42
S-layer homology domain.
pfam00395 SLH 2.28e-11 93 134 1 42
S-layer homology domain.
pfam13205 Big_5 2.22e-10 551 663 8 106
Bacterial Ig-like domain.
NF033190 inl_like_NEAT_1 5.60e-09 35 206 582 754
NEAT domain-containing leucine-rich repeat protein. Members of this family have an N-terminal NEAT (near transporter) domain often associated with iron transport, followed by a leucine-rich repeat region with significant sequence similarity to the internalins of Listeria monocytogenes. However, since Bacillus cereus (from which this protein was described, in PMID:16978259) is not considered an intracellular pathogen, and the function may be iron transport rather than internalization, applying the name "internalin" to this family probably would be misleading.
pfam12733 Cadherin-like 4.82e-06 794 880 2 85
Cadherin-like beta sandwich domain. This domain is found in several bacterial, metazoan and chlorophyte algal proteins. A profile-profile comparison recovered the cadherin domain and a comparison of the predicted structure of this domain with the crystal structure of the cadherin showed a congruent seven stranded secondary structure. The domain is widespread in bacteria and seen in the firmicutes, actinobacteria, certain proteobacteria, bacteroides and chlamydiae with an expansion in Clostridium. In contrast, it is limited in its distribution in eukaryotes suggesting that it was derived through lateral transfer from bacteria. In prokaryotes, this domain is widely fused to other domains such as FNIII (Fibronectin Type III), TIG, SLH (S-layer homology), discoidin, cell-wall-binding repeat domain and alpha-amylase-like glycohydrolases. These associations are suggestive of a carbohydrate-binding function for this cadherin-like domain. In animal proteins it is associated with an ATP-grasp domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QOX65054.1 3.69e-196 29 984 48 982
VDN48011.1 2.60e-122 13 663 11 653
QNL44990.1 2.38e-109 28 663 26 660
VDN48012.1 3.41e-98 22 663 23 653
QSZ27623.1 1.14e-57 35 426 46 454

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
C6CRV0 2.48e-20 15 205 1260 1460
Endo-1,4-beta-xylanase A OS=Paenibacillus sp. (strain JDR-2) OX=324057 GN=xynA1 PE=1 SV=1
P38536 8.12e-18 23 206 1670 1857
Amylopullulanase OS=Thermoanaerobacterium thermosulfurigenes OX=33950 GN=amyB PE=3 SV=2
P19424 1.36e-17 9 206 15 216
Endoglucanase OS=Bacillus sp. (strain KSM-635) OX=1415 PE=1 SV=1
P38535 3.37e-17 17 206 890 1083
Exoglucanase XynX OS=Acetivibrio thermocellus OX=1515 GN=xynX PE=3 SV=1
Q06852 1.69e-16 30 164 2136 2285
Cell surface glycoprotein 1 OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=olpB PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.644882 0.293819 0.058306 0.000955 0.000547 0.001488

TMHMM  Annotations      download full data without filtering help

start end
5 27