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CAZyme Information: MGYG000004151_04439
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas citronellolis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas citronellolis | |||||||||||
| CAZyme ID | MGYG000004151_04439 | |||||||||||
| CAZy Family | AA3 | |||||||||||
| CAZyme Description | Oxygen-dependent choline dehydrogenase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 6040; End: 7695 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 12 | 535 | 5.2e-151 | 0.9929577464788732 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK02106 | PRK02106 | 0.0 | 13 | 549 | 6 | 546 | choline dehydrogenase; Validated |
| COG2303 | BetA | 8.78e-165 | 7 | 542 | 2 | 541 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| TIGR03970 | Rv0697 | 5.12e-81 | 14 | 535 | 2 | 487 | dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. |
| pfam00732 | GMC_oxred_N | 5.39e-45 | 83 | 302 | 17 | 216 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
| pfam05199 | GMC_oxred_C | 5.54e-40 | 394 | 530 | 1 | 143 | GMC oxidoreductase. This domain found associated with pfam00732. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AWP09430.1 | 1.11e-153 | 13 | 549 | 20 | 565 |
| ANI26486.1 | 9.07e-149 | 13 | 549 | 71 | 616 |
| CAB3230510.1 | 5.72e-141 | 13 | 532 | 25 | 553 |
| CAG5089487.1 | 3.92e-127 | 7 | 536 | 11 | 560 |
| QWC20507.1 | 3.00e-122 | 13 | 538 | 6 | 528 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6YS1_AAA | 1.39e-78 | 13 | 545 | 8 | 571 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
| 6ZH7_A | 1.95e-78 | 13 | 545 | 8 | 571 | ChainA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
| 6YRU_AAA | 1.95e-78 | 13 | 545 | 8 | 571 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
| 6YS2_AAA | 2.73e-78 | 13 | 545 | 8 | 571 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
| 5NCC_A | 2.83e-78 | 13 | 545 | 24 | 587 | Structureof Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q3BXK8 | 4.99e-165 | 13 | 548 | 5 | 547 | Oxygen-dependent choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) OX=316273 GN=betA PE=3 SV=1 |
| C3K3D3 | 1.44e-164 | 13 | 548 | 5 | 547 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=betA PE=3 SV=1 |
| Q88AE7 | 3.39e-163 | 13 | 548 | 7 | 549 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=betA PE=3 SV=1 |
| Q4ZM63 | 1.92e-162 | 13 | 548 | 7 | 549 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=betA PE=3 SV=1 |
| Q48CM7 | 3.85e-162 | 13 | 548 | 7 | 549 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000046 | 0.000006 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |