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CAZyme Information: MGYG000004253_00365

You are here: Home > Sequence: MGYG000004253_00365

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Desulfovibrio piger_A
Lineage Bacteria; Desulfobacterota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio piger_A
CAZyme ID MGYG000004253_00365
CAZy Family GT4
CAZyme Description Vitamin B12 import ATP-binding protein BtuD
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
649 MGYG000004253_4|CGC1 71409.98 8.1087
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004253 2386728 MAG China Asia
Gene Location Start: 31825;  End: 33774  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004253_00365.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT4 465 617 1.2e-28 0.9125

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd03255 ABC_MJ0796_LolCDE_FtsE 6.09e-92 5 217 1 216
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
COG1136 LolD 5.66e-91 4 217 1 218
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis].
NF038007 ABC_ATP_DarD 2.00e-64 20 219 20 218
darobactin export ABC transporter ATP-binding protein.
COG4181 YbbA 7.99e-61 2 220 4 225
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism].
TIGR03608 L_ocin_972_ABC 9.06e-60 20 214 13 206
putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
SFV72712.1 0.0 1 649 1 649
AMD89422.1 0.0 1 648 1 653
VZH35395.1 4.86e-316 1 649 1 655
ATD81516.1 8.15e-312 1 649 1 653
SPD34221.1 8.15e-312 1 649 1 653

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5XU1_A 8.47e-49 1 219 13 233
Structureof a non-canonical ABC transporter from Streptococcus pneumoniae R6 [Streptococcus pneumoniae R6],5XU1_B Structure of a non-canonical ABC transporter from Streptococcus pneumoniae R6 [Streptococcus pneumoniae R6]
5LJ9_A 7.36e-46 1 224 1 226
Structureof the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJ9_B Structure of the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJ9_C Structure of the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJA_A Structure of the E. coli MacB ABC domain (P6122) [Escherichia coli K-12]
1L2T_A 1.58e-45 21 217 21 221
ChainA, Hypothetical ABC transporter ATP-binding protein MJ0796 [Methanocaldococcus jannaschii],1L2T_B Chain B, Hypothetical ABC transporter ATP-binding protein MJ0796 [Methanocaldococcus jannaschii]
3TIF_A 2.12e-44 21 217 21 221
Dimericstructure of a post-hydrolysis state of the ATP-binding cassette MJ0796 bound to ADP and Pi [Methanocaldococcus jannaschii DSM 2661],3TIF_B Dimeric structure of a post-hydrolysis state of the ATP-binding cassette MJ0796 bound to ADP and Pi [Methanocaldococcus jannaschii DSM 2661]
1F3O_A 7.44e-43 8 217 5 221
Crystalstructure of MJ0796 ATP-binding cassette [Methanocaldococcus jannaschii]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O34979 1.09e-51 11 220 11 219
Uncharacterized ABC transporter ATP-binding protein YvrO OS=Bacillus subtilis (strain 168) OX=224308 GN=yvrO PE=3 SV=2
O31711 8.09e-51 20 220 20 219
Uncharacterized ABC transporter ATP-binding protein YknY OS=Bacillus subtilis (strain 168) OX=224308 GN=yknY PE=1 SV=1
Q9WYI7 1.76e-50 1 217 1 219
Uncharacterized ABC transporter ATP-binding protein TM_0352 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0352 PE=3 SV=1
Q2W450 9.80e-48 20 220 24 224
Lipoprotein-releasing system ATP-binding protein LolD OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=lolD PE=3 SV=1
Q58903 2.46e-47 4 220 1 219
Uncharacterized ABC transporter ATP-binding protein MJ1508 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1508 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000053 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004253_00365.